Browsing by browse by HERDC Category Description "E1 Refereed Scholarly Conference Publication"
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Conference PublicationPublication 2-Compromise Usability in 1-Dimensional Statistical DatabasesMany believe that data mining poses the biggest privacy challenge in the next decade. In this paper we concentrate on threats to privacy arising from the possibility of combining aggregate data to deduce the confidential individual values. We determine the maximum number of sum totals that can be disclosed without leading to a 2-compromise in a 1-dimensional database for range queries.
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Conference PublicationPublication 2-Compromise: Usability in 1-Dimensional Statistical DatabasesMany believe that data mining poses the biggest privacy challenge in the next decade. In this paper we concentrate on threats to privacy arising from the possibility of combining aggregate data to deduce the confidential individual values. We determine the maximum number of sum totals that can be disclosed without leading to a 2-compromise in a 1-dimensional database for range queries.
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Conference PublicationPublication 3-Band Linear Phase Bi-orthogonal Wavelet Filter BanksWe look at the design of 3-band linear phase biorthogonal wavelet filter banks. We first design the scaling filters then complete the filter bank subject to the constraint that is linear phase. Thus our emphasis is on filter bank completion where linear phase wavelet filters are constructed from 2-band factorization techniques.1734 1 - Some of the metrics are blocked by yourconsent settings
Conference PublicationPublication 3D immersive virtual worlds in higher education: An Australian and New Zealand scoping study(University of Queensland, 2010) ;Dalgarno, Barney ;Lee, Mark JW ;Carlson, Lauren; Tynan, BelindaThis paper reports initial findings of a major scoping study that is being undertaken to examine current and planned applications of 3D immersive virtual worlds at higher education institutions across Australia and New Zealand. This scoping study is the first of its kind in the region. It is parallel and complementary to several studies conducted in other countries, and results obtained thus far appear consistent with international trends. The overall research design of the scoping study is discussed, along with preliminary results from the Australian/New Zealand sector-wide questionnaire. There seem to be preferred platforms being used in the Australian and New Zealand context, and usage has increased dramatically in recent years. Academics are using 3D immersive virtual worlds with their students in a variety of ways, for both assessable and non-assessable tasks. The project is supported by the Distance Education Hub research consortium, with team members from Charles Sturt University and the University of New England.1257 - Some of the metrics are blocked by yourconsent settings
Conference PublicationPublication The 5G Debate in New Zealand – Government Actions and Public Perception: Invited PaperThe Fifth Generation (5G) of mobile phone technology is gradually witnessing deployment in many parts of the world. New Zealand is also expected to start 5G deployment by the end of 2019. This paper reviews the progress made to date regarding the introduction of 5G specifically in New Zealand. This paper explores several technical and non-technical issues that relate to the 5G debate that is ongoing across the country. Of particular interest are topics that are associated with government's policy and actions towards 5G, and the perception of the general public about this upcoming technology.
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Conference PublicationPublication Absolute quantification of Marek's disease virus serotype 2 (MDV2) using real-time polymerase chain reaction and its application to field dust samples(University of Sydney, Poultry Research Foundation, 2006); ; ;Islam, AminulMethods for taqman real-time PCR assays to detect the three serotypes of MDV are available (Islam et al., 2004), and an absolute quantification has been developed for MDV serotype 1 and serotype 3. The development of a method for absolute quantification of Marek's disease virus serotype 2 (MDV2) is described in this paper. Thus, it is now possible to perform qPCR assays for all three serotypes ofMDV on a sample. Absolute quantification of MDV2 in dust samples from poultry farms across Australia in a preliminary study, revealed the presence of MDV2 in 13 of 30 samples tested.1410 1 - Some of the metrics are blocked by yourconsent settings
Conference PublicationPublication The absorption of bioplex-trace minerals(University of Sydney, Poultry Research Foundation, 2007) ;Bao, Yumin; ; Bruerton, KAn experiment was conducted to examine the effects of bioplex or inorganic Cu, Fe, Mn and Zn supplementation of a mineral-deficient broiler diet on bird performance on deep litter and on absorption site and digestibility. A deficiency of trace minerals severely depressed feed intake and growth rate, but did not adversely affect FCR. Supplemental organic (Bioplex) sources of trace minerals significantly (P<0.01) improved zinc absorption in the ileum.1394 1 - Some of the metrics are blocked by yourconsent settings
Conference PublicationPublication Abstract B45: Multiple myeloma: A novel tailor-made therapeutic management(American Association for Cancer Research, 2015-08-19) ;Krishnan, Sabna Rajeev; ;Luk, Frederick ;Brown, Ross DuncanKwan, Yiu LamIntroduction: Multiple Myeloma (MM) is an incurable hematological malignancy affecting plasma cells marked by highly heterogeneous survival rate. Relapse is a significant impediment to the successful treatment of MM clinically. One of the main causes for relapse in MM is the development of multidrug resistance (MDR) to cancer chemotherapy. Currently, risk stratification to MM sub-groups and categorization of complete response to therapy are assessed based on molecular, cytogenetic markers using bone marrow biopsy as available systemic markers are incompetent in this regard. We are exploring the clinical significance of our recent in vitro and in vivo findings of a novel non-genetic basis to MDR whereby tiny vesicles called microparticles (MPs) shed from cancer cell's surface transfer MDR phenotype intercellularly. Microparticles isolated from the peripheral blood of patients who suffer from Multiple Myeloma will be phenotyped for resistance, adhesion and dissemination markers. Subsequently, these parameters will be correlated clinically to assess whether these characteristics are predictive of treatment outcome.
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Conference PublicationPublication Abstract Interface - Specification Languages For Device-Independent Interface Design: Classification, Analysis and ChallengesAs computing devices become small and heterogeneous, it is inefficient and laborious to design a different version of application interface for each device. There is a need for application interfaces to be able to adapt to different devices. This paper studies abstract interface specification languages as the approach to address device-independent application interface design. It classifies them into three groups, discusses their features and analyzes their similarities and differences. It has identified abstraction level and mapping mechanism as two key issues that need to be well considered to improve the scalability and robustness of such languages.1118 1 - Some of the metrics are blocked by yourconsent settings
Publication Open AccessConference PublicationAcademic numeracy and first year undergraduate studies across six regional universities(Mathematics Education Research Group of Australasia (MERGA), 2019) ;Woolcott, Geoff ;Galligan, Linda; ;Marshman, MargaretAxelsen, TarynThis paper is a preliminary investigation into first year undergraduate students’ progress in academic numeracy studies across six Australian regional universities. The paper analyses a survey of university teachers, follow-up interviews and secondary academic numeracy data. Initial findings are presented in terms of the nature of academic numeracy required in the subjects offered and support strategies provided. The study suggests that support services are not contributing well to attrition in subjects requiring academic numeracy. Some effects are due to the diversity of the student body and further research is needed on both localised and cross-university approaches that focus on student’s goals and personal agency.1665 19 - Some of the metrics are blocked by yourconsent settings
Conference PublicationPublication Academic Professional development for quality experimental placements: Using National collaborative approached for creating online respository tasks(Australian Collaborative Education Network (ACEN), 2010) ;Owen, Susanne M; ;Ryan, Greg ;McKauge, Leigh MWoulfe, JimBackground: A commitment to quality teaching and student learning outcomes is an increasing expectation in Australian higher education institutions. In preparing for experiential placements, partnership approaches among discipline - specific academic, practitioner and professional communities are important. A key challenge is the development of academics working within professional preparatory programs and ensuring that they are continuously updated in discipline - specific aspects and also up-skilled in curriculum planning, learning and assessment approaches. Research has highlighted the ineffectiveness of professional development models involving one-off events. Alternatively, collaborative workshop activities focused on practical materials relevant to student learning and conducted over an extended timeframe and within a community of practice can promote long-term change in learning and assessment strategies. Aim: Within an Australian Learning and Teaching Council (ALTC) funded project, a key aim was to establish national collaborative professional development workshops for academics and interested others focused on devising quality learning and assessment tasks for pharmacy experiential placements and to gauge effectiveness. Method: During a fifteen-month period, a series of workshops was established within annual professional conferences. Academics and professional/registration board representatives worked together on various topics to develop learning and assessment tasks using an online template. After the workshops, follow-up occurred through assigned group leaders liaising with other group members to finalise the tasks. A quality assurance process was used by the project team prior to publication of tasks. Evaluation of the collaborative professional learning process was undertaken through written surveys involving 5 point Likert scale survey items and free response questions. Semi-structured interviews were conducted by an external interviewer, with manual collation of results and thematic analysis occurring.1129 - Some of the metrics are blocked by yourconsent settings
Publication Open AccessConference PublicationThe academic role: Service, compliance, freedom(Higher Education Research and Development Society of Australasia (HERDSA), 2014) ;Baron, PaulaIn this paper, we reflect upon the rise of neoliberalism and performativity in the tertiary sector and the possibilities for the exercise of authenticity and academic freedom in this environment. We argue that the rise of performativity has not only implications for university quality, but also implications for the wellbeing of academics. We base this argument in a substantial body of literature from the law well-being movement that highlights the poor prospects for individual productivity and well-being when core values are ignored or subverted in order to adhere to a particular role.1670 1 - Some of the metrics are blocked by yourconsent settings
Conference PublicationPublication Academic Writing in Thai: The research articleAcademics share their research, present their arguments, as well as establish their professional credentials through writing. However, researchers from language backgrounds other than English may be at a disadvantage when it comes to publishing in internationally recognised journals, many of which are in English. Studies suggest that cultural differences exist in the generic and rhetorical structures of texts across different languages. An investigation of the generic and rhetorical structure of academic texts in languages other than English may yield valuable insights into these debates. This paper presents a preliminary study of a specific genre of academic writing in Thai: the research article. The aim was to investigate how argument is carried in a text through rhetorical structure. The study looks at thematic development and the interpersonal or features or 'metadiscourse' in the text which writers use to engage with their audience. Initial results point to a need for further work in this area.1154 - Some of the metrics are blocked by yourconsent settings
Publication Open AccessConference PublicationAn Accelerated CS0 for Online Mature-Age Part-Time StudentsIn this paper,we present the design of a "CS0" Computational Thinking course at an Australian regional university, that is also offered to non-enrolled students via the Open Universities Australia network. Unlike many CS0 courses, this targets a predominantly mature age and part-time demographic, although high school leavers are also included. Our design attempts to recognise that computational thinking experiences are increasingly incorporated into school experiences, both through curricula and outreach. Consequently, a CS0 course no longer has the sole purpose of introducing students to computing. It also serves a bridging role, giving a compressed form of outreach and school experiences to adult learners who might have missed them. It also brings brings opportunities to compress the introduction of programming, so that more time can be spent in challenges that stretch students' experience, and in demonstrating its application to areas such as robotics and social AI.1237 16 - Some of the metrics are blocked by yourconsent settings
Conference PublicationPublication The Acceptance of E-learning Recommender System for Saudi Universities: Framework and Hypotheses(Association for Computing Machinery (ACM), 2015) ;Alharbi, Hadeel; In this paper, a framework is presented to explore the factors of the e-learning recommender system acceptance for Saudi universities. This will assist to investigate the students/instructors experience according to the e-learning service quality. Such framework that is based on the Technology Acceptance Model (TAM), describes the factors of online learning acceptance should be considered in the e-learning recommender system because it is viewed as a determinant of student/instructor/university satisfaction.2048 - Some of the metrics are blocked by yourconsent settings
Publication Open AccessConference PublicationThe acceptance of Enterprise Resource Planning (ERP) systems and financial performance of some research propositions(University of New England, 2013)Bazhair, AymanThe purpose of this research paper to present the synthesized theoretical and empirical literature to help in the development of propositions and suggestions of a research agenda on the acceptance of ERP systems and their link with financial performance, the paper develops the technology acceptance model (TAM) to synthesize relevant literature and to develop proposition for future research agendas. The proposition and the research agenda will provide an adequate explanation of the acceptance of ERP systems, and their possible association with financial performance of organizations. The literature does provide a canon of acceptance of ERP systems in relation to financial performance. This research provides a positive association between the acceptance of ERP systems and financial performance. Also, the use of TAM theory provides further insight into identifying the adoption factors of ERP.1022 458 - Some of the metrics are blocked by yourconsent settings
Conference PublicationPublication Accepting Choices: To ICT or Not to ICT - Engagement!Over a period of several weeks 16 male students in a middle school were required to complete a project to measure their level of engagement using Information Communication Technology (ICT). During the lessons students were observed by the classroom teacher, two pre-service teachers and an ICT education lecturer, who assisted, photographed, videoed and interviewed students. Students were also requested to complete survey questions on three occasions throughout the project. The project required student to use anything they desired, technology or otherwise, to research and present their findings in order persuade the observers to choose their group's project. The tasks of the onlookers were to observe whether students were engaged, or otherwise, in the production and presentation of their project. The degree of engagement when using ICT is dependant on a student's ability to choose how and when to implement ICT. Engagement is the combination of feelings (emotional), observable actions or performance (behavioural) and perceptions and beliefs (cognitive). Many observations were made about the students' choice of whether to use ICT or not and this paper addresses the results of their engagement in the task.1459 364 - Some of the metrics are blocked by yourconsent settings
Conference PublicationPublication Access Control Based Dynamic Path Establishment for Securing Flows from the User Devices with Different Security ClearanceIn this work, we proposed Software Defined Networking (SDN) based access control techniques for preventing unauthorised access to traffic flows in secure networks. We have developed an Access Control Application (ACA) for the SDN Controller for differentiating the flow requests from the user/devices that are classified at different security levels and configuring the routes with physical or virtual separation between the flows. This separation of flows makes it difficult for the malicious users with lower security clearance to access the flows that belong to the users with higher security clearance. Hence, our work significantly minimises the attack surface in secure environments. We will also discuss the prototype implementation of our model and some performance characteristics.
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Conference PublicationPublication Access Control in a Health SystemIt has become common practise to construct software systems as a collection of heterogeneous distributed components. Information within these components tends to be of a sensitive nature, and therefore requires some form of access control. Although there are existing architectures available to provide this control, they tend to be an add on feature that is complicated and inflexible. The aim of this paper is to investigate the access constraints of a real-world example where information is of a highly sensitive nature, and to design a system whose security is based on the use of bracket capabilities.1010 - Some of the metrics are blocked by yourconsent settings
Publication Open AccessConference PublicationAccommodating Variable Disease Challenge on Breeding Value Prediction for Sires - Using Footrot as an Example(Association for the Advancement of Animal Breeding and Genetics (AAABG), 2017); ;Ferguson, M B ;Gibson, W; Footrot is a highly contagious hoof disease of sheep, the expression of which depends on environmental conditions and the presence of infective strains of bacteria. Footrot scored from field exposure is, therefore, a potentially difficult trait to analyse across time and production environments. This study explores the use of pre-analysis transformation techniques to account for the disease incidence and pattern of scores obtained, using footrot as an example. A biological transformation, where the phenotypes were transformed to a similar incidence level based on a nonlinear transition of scores over time produced the highest rank correlation of the sire's breeding values across challenges compared to more traditional statistical transformation techniques. The results suggest that using a transformation based on biological information is likely to improve the estimation of breeding values for footrot.2500 1 - Some of the metrics are blocked by yourconsent settings
Publication Open AccessConference PublicationAccounting for Ewe Source Effects in Genetic Evaluation of Merino Fleece Traits(Association for the Advancement of Animal Breeding and Genetics (AAABG), 2019) ;Egerton-Warburton, K L ;Mortimer, S IThe significance of ewe bloodline sources and their interactions with sire effects were examined for Merino fleece traits recorded on progeny of Macquarie Merino Sire Evaluation and Merino Lifetime Productivity sites. Ewe source effects significantly influenced fleece traits expressed at post weaning, hogget and adult ages. Sire x ewe genotype interactions on fleece traits across ages were generally unimportant i.e. consistent sire rankings, accounting for small amounts of the phenotypic variation (less than 2%) in the fleece traits. These results support the methods to account for these effects that are used routinely in MERINOSELECT genetic evaluations.1774 6 - Some of the metrics are blocked by yourconsent settings
Publication Open AccessConference PublicationAccounting for population structure in genomic prediction of Australian merino sheep(Association for the Advancement of Animal Breeding and Genetics (AAABG), 2017); ; ; The aim of this study was to compare different ways of accounting for population structure for genomic prediction of three economic traits in an Australian Merino sheep population. Population structure was accounted for either by fitting genetic groups (GG) derived from pedigree, or fitting principal components (PCs) calculated from the genomic relationship matrix based on 50k density SNP marker genotypes. Genomic breeding values (GBV) were calculated using genomic best linear unbiased prediction (GBLUP) and the GBV accuracy was evaluated based on 5 fold cross-validation across half-sib families. Best linear unbiased estimation (BLUE) of GG or PC effects were added to the GBV. Results showed that accounting for population structure either by fitting GG or PCs improved the accuracy of genomic prediction. Furthermore, fitting the first two PCs gave a similar accuracy to fitting GG derived from pedigree. The improvement in GBV accuracy after accounting for population structure in studied traits was not high (3.8% when averaged across traits) which may be because the genomic relationship matrix will implicitly account for some of the population structure effect when the GG or PCs are not fitted in analysis. In the case of missing or incomplete pedigrees, PCs can be used to account for population structure and to improve the prediction accuracies.2636 1 - Some of the metrics are blocked by yourconsent settings
Conference PublicationPublication Accounting for selective slaughter over time when estimating breeding values for carcase traits?: A simulation study(Association for the Advancement of Animal Breeding and Genetics (AAABG), 2007); ; Progeny test data used to estimate breeding values (EBVs) of sires for carcase traits may come from measurements taken on animals that have been slaughtered over time based on individual animal market suitability. Confounding between genetic effects and age can result. However, in the current study appropriate adjustment for growth rate resulted in highly accurate sire EBVs for both the slaughtering criteria, namely liveweight, and for a second trait (e.g. a carcase trait) regardless of the genetic correlation between the two traits.1600 - Some of the metrics are blocked by yourconsent settings
Publication Open AccessConference PublicationAccounting for the Cost of Reproductive Technologies During Selection in Sheep Breeding Programs(Association for the Advancement of Animal Breeding and Genetics (AAABG), 2015); ; ; Female reproductive technologies, such as MOET and JIVET, have been shown to increase the rate of genetic gain. However, they incur substantial costs to breeders using them. In this work, optimal contribution selection was used to find the balance between genetic merit, co-ancestry and cost of reproductive technologies in sheep breeding programs. To offset the cost of using the reproductive technologies, breeders received a premium based on the value of the genetic gain achieved by the ram buyers. Australian terminal sire and Merino breeding programs were simulated, using industry indexes. For the terminal sire breeding program, the premium needed to be greater than 50% beforen reproductive technologies were used. In the Merino breeding program, where the standard deviation of the index is 3 times higher than the terminal index, reproductive technologies were used with lower premiums (6% and 32% premiums, respectively). For both breeding programs, the rate of genetic gain increased with more allocations of reproductive technologies. There was also a higher proportion of JIVET assigned compared to MOET, due to a lower cost per lamb. The benefits of genomic selection were greatest in the merino program, due to the higher use of JIVET. Assigning costs of reproductive technologies allows for robust and practical breeding programs to be designed.2492 1 - Some of the metrics are blocked by yourconsent settings
Publication Open AccessConference PublicationAccounting for trait-specific genomic and residual polygenic covariances in multivariate single-step genomic evaluationFor multivariate, single-step genomic best linear unbiased prediction analyses fitting a breeding value model, it is often assumed that the proportions of total genetic variance accounted for by genomic markers and residual polygenic effects are the same for all traits. Different covariance matrices for the two types of genetic effects are readily taken into account by fitting them separately. However, this can lead to slow convergence rates in iterative solution schemes. We propose an alternative computing strategy which – exploiting a canonical transformation – allows for trait-specific covariances whilst directly fitting total genetic effects only. Its effects on convergence rates and gains in accuracy and bias of genomic evaluation compared to analyses assuming proportionality of covariance matrices are examined using a small simulation study. Results show comparatively little improvement in accuracies but worthwhile reductions in overdispersion of predicted genetic merits for genotyped individuals without phenotypes.
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Conference PublicationPublication The accumulation of organic matter and the influence of geomorphic variability along the Barwon-Darling River, Australia(Department of Primary Industries, Water and Environment, 2005); ;Foster, JM ;Lenon, EOrganic matter, in its various forms, is thought to be important for the ecological functioning of large lowland river systems. During periods of low flow, organic material accumulates on the floodplain and other in-channel surfaces and this material then provides a potential energy source for riverine food webs when it enters the river during flooding. Variations in the type and amount of this organic material may therefore have implications for aquatic food webs in Australian lowland river systems. In this paper we consider spatial variations in organic matter content present on in-channel floodplain surfaces between different geomorphic settings along the Barwon-Darling River. In general, floodplain surfaces in wider, unconfined geomorphic settings were found to contain greater amounts of surface leaf litter and sediment organic matter than surfaces in more confined geomorphic settings, at both the valley trough scale (leaf litter-239.7g/m² ~ 93% greater; sediment organics-8.7% ~ 50% greater) and the channel cross-section scale (leaf litter- 17.8% greater; sediment organics- 10.4% greater), Across both valley trough and river channel conditions, floodplain surfaces higher in the bankfull channel contained on average, twice the amount of surface leaf litter (350.1 g/m² ±64.2) and sediment organic matter (10.1% ±1.3), than surfaces at lower elevations (Leaf litter-61.5g/m² ±16.5; sediment organics-4.9% ±0.7). This study suggests that large scale geomorphological conditions can influence organic matter accumulation on in-channel floodplain surfaces. Overbank flows occur relatively infrequently in large lowland river systems hence smaller in-channel pulses and the maintenance of in-channel geomorphic structures could also prove important to the ecological integrity of these systems.1421 - Some of the metrics are blocked by yourconsent settings
Conference PublicationPublication The accuracy and usability of the radial gel diffusion assay and a dye-release technique for determination of β-glucanase in feed(University of Sydney, Poultry Research Foundation, 2004); ;Nhan, U ;Kocher, Andreas ;Tan, H M ;Teo, ACarter, R RTwo enzyme assays, the radial diffusion and the dye-release methods, were modified and tested for their suitability in measuring β-glucanase activity in poultry feed. Enzymes A and B were incorporated into a barley-based broiler starter diet at three levels (500, 1000 and 2000 g/t). The measured β-glucanase activities were 35 U/g and 49 u/g for Enzymes A and B, respectively. A comparison of enzyme recovery rates from samples containing known amounts of the enzyme and from a buffer solution containing the same amount of the enzyme revealed that a fixed percentage of the enzyme bound to feed components in a dose responsive manner. Thus, enzyme recovery rates for the feed samples were not complete and varied between 66% and 97% for the radial diffusion assay and between 76% and 91% for the dyerelease assay. The two assays largely agreed with each other although at low enzyme concentrations, the dye-release assays gave higher recovery rates with lower standard errors. It may be concluded that both assays are useful in determining β-glucanase activity in feed and digesta samples, but the radial diffusion assay is cheaper to perform.1339 1 - Some of the metrics are blocked by yourconsent settings
Publication Open AccessConference PublicationThe Accuracy Obtained from Reference Populations for Genomic Selection(Association for the Advancement of Animal Breeding and Genetics (AAABG), 2019); ; ; For the design of breeding programs it is important to understand how trait measurement translates into selection accuracy. The introduction of genomic selection has created new challenges, in particular in relation to designing reference populations and valuing information sources for their contribution to genetic gain. The accuracy of genomic prediction depends on trait heritability, the number of phenotypes used (on genotyped animals) and the ‘effective number of chromosome segments’ that need to be estimated. The latter parameter is challenging to estimate but can in principle be derived from the variation in relationships between the reference set and the target animal. This paper attempts to validate that theory based on real data, with the aim to develop further insight into the value of a certain reference set for the genomic prediction of a certain target animal.1795 3 - Some of the metrics are blocked by yourconsent settings
Publication Open AccessConference PublicationAccuracy of Genomic Prediction for Merino Wool Traits Using High-Density Marker Genotypes(Association for the Advancement of Animal Breeding and Genetics (AAABG), 2015); ; High-density (HD) marker genotypes could increase the accuracy of genomic prediction by providing stronger linkage disequilibrium (LD) between markers and quantitative trait loci affecting a trait, especially in populations with a high genetic diversity such as Australian Merino sheep. The aim of this study was to compare the accuracy of genomic prediction for Merino yearling and adult wool traits based on observed and imputed 600K single nucleotide polymorphism (SNP) marker genotypes with the accuracy based on moderate-density (50K) marker genotypes. Genomic best linear unbiased prediction (GBLUP) and a Bayesian approach (BayesR) were used as prediction methods. Results showed a small relative increase in accuracy between 2 to 15% (of the previous accuracy) when using a HD marker set. The results of BayesR were on average similar to GBLUP. Considerably higher (up to 25% relative increase) in prediction accuracy was observed for animals with lower genomic relationship to the reference population.2377 1 - Some of the metrics are blocked by yourconsent settings
Publication Open AccessConference PublicationAccuracy of Genomic Prediction from Multi-Breed Sheep Reference Population(Association for the Advancement of Animal Breeding and Genetics (AAABG), 2013); ; Genomic estimated breeding values (GEBV) were calculated based on a combination of purebred and crossbred sheep for birth weight, weaning weight and post weaning weight using genomic best linear unbiased prediction (GBLUP). The genomic relationship matrix (G) was calculated based on population wide or breed of haplotype specific allele frequency using the 50k ovine Illumina SNP-chip. The accuracy of genomic prediction was estimated based on the correlation between genomic breeding value and an accurate breeding value based on progeny records. The result showed better genomic prediction accuracy for breeds with higher representation in the combined reference populations. Accuracies slightly decreased when the reference set contained a significant set of additional animals from another breed. This study showed no extra accuracy from across breed information using 50k SNP marker panel. The result showed a small but non-significant increase in accuracy when using breed specific allele frequencies in the calculation of G.2064 6 - Some of the metrics are blocked by yourconsent settings
Conference PublicationPublication The accuracy of genomic selection in predicting carcass traits in meat sheep(German Society for Animal Science, 2010) ;Slack-Smith, Andrew; ;Hickey, JohnGenome-wide association studies (GWAS) for quantitative traits in livestock are primarily focused on genomic selection and the prediction of genomic breeding values (GEBV). Genomic selection is a form of marker-assisted selection in which genetic markers covering the whole genome are used so that most QTL are in linkage disequilibrium with at least one marker (Meuwissen et al. 2001). As an alternative to gene discovery, which is genome research focused on mapping and characterising quantitative trait loci (QTL) (Gao et al. 2007) genome-wide association analysis allows prediction of breeding value or phenotype for traits of economic importance using all SNP across the whole genome simultaneously (Lee et al. 2008). Prediction of breeding vale is relevant for the stud sector, for genome assisted selection of breeding animals, whereas prediction of phenotype can be relevant in production systems, for early allocation of animals into specific cohorts. Phenotypic prediction of growth and composition aims to sort animals into homogeneous groups to increase uniformity and profitability (Tedeschi et al. 2004) and therefore helps to satisfy downstream consumers. Meat quality grade, yield grade and growth performance factors explain much of the variation in profit under grid pricing (Greer and Trapp 2000) and the cost penalties when specifications are missed can be large. Trials conducted by (Cox et al. 2006) showed 42% of product did not meet specification in the Australian food service industry. Using phenotypic prediction in the management of animals to increase the proportion that meet specification could increase profitability in sheep meat production by increasing the consistency in meeting consumer requirements. Better allocation of animals to cohorts allows better animal management and can be used to create a relationship between consumers and a product (Walker and Olson 1991) thereby increasing customer retention and satisfaction (Eriksson and Vaghult 2000). In this study we explore the accuracy of predicting phenotype for carcass and growth traits. We use data collected on animal phenotypes and genotypes based on a 50k SNP chip, using a subset of a data to estimate SNP effects and a remaining test set to evaluate the accuracy of genome based prediction of phenotype. Training and test sets were created either randomly; within sire families or across breeds.1446 1 - Some of the metrics are blocked by yourconsent settings
Conference PublicationPublication Accuracy of genomic selection: Comparing theory and results(Association for the Advancement of Animal Breeding and Genetics (AAABG), 2009) ;Hayes, B J ;Daetwyler, H D ;Bowman, P ;Moser, G; ; ;Khatkar, M ;Raadsma, H WGoddard, M EDeterministic predictions of the accuracy of genomic breeding values in selection candidates with no phenotypes have been derived based on the heritability of the trait, number of phenotyped and genotyped animals in the reference population where the marker effects are estimated, the effective population size and the length of the genome. We assessed the value of these deterministic predictions given the results that have been achieved in Holstein and Jersey dairy cattle. We conclude that the deterministic predictions are useful guide for establishing the size of the reference populations which must be assembled in order to predict genomic breeding values at a desired level of accuracy in selection candidates.2078 - Some of the metrics are blocked by yourconsent settings
Publication Open AccessConference PublicationThe Accuracy of Genotype Imputation in Selected South African Sheep Breeds from Australian Reference Panels(Association for the Advancement of Animal Breeding and Genetics (AAABG), 2019-12) ;Nel, C L; ; ;Cloete, S W P; Dzama, KThe cost of genotyping is becoming increasingly affordable but remains an influential factor for determining the SNP-density at which genotyping can proceed. Compared to Australian breeding programs, the South African wool sheep industry represents parallel objectives within similar environments but presently lacks the necessary infrastructure to exploit modern technologies such as genomic selection. The aim of the study was to determine the feasibility of across country imputation as an alternative to high density genotyping on a local basis. Following imputation from a 15k to 50k density, mean accuracy levels of 0.87 and 0.85 were observed in the Merino and Dohne Merino breeds, while the highest levels of accuracy of 0.88 and 0.90 was observed in the Dorper and White Dorper breeds, respectively. The extent of genetic relationships was considered amongst the key factors that limit the ability to impute at an accuracy above 90%, but the observed results suggest that across country imputation could remain useful. Imputation from reference panels genotyped at densities higher than 50k and research into across country prediction is recommended.1958 2 - Some of the metrics are blocked by yourconsent settings
Conference PublicationPublication Accuracy of Igenity Direct Genomic Values in Australian Angus(Association for the Advancement of Animal Breeding and Genetics (AAABG), 2013); The quality of Igenity² direct genomic values (GEBVs) derived by two different prediction procedures for 12 traits of 1032 Angus bulls was estimated as the genetic correlation to their phenotypic target traits. In addition, the effect of a decreasing genetic relationship between validation and training population was inferred by subdividing the set of 1032 GEBVs accordingly. Genetic correlations estimated were medium to high even when all training individuals were excluded from the analysis, and well in line with those already published. Thus blending Australian Angus breeding values with Igenity GEBVs can be beneficial for breeders.2219 - Some of the metrics are blocked by yourconsent settings
Conference PublicationPublication ACEC2014 - Developing Quicksmart Online To Engage Learners(Australian Council for Computers in Education (ECCA), 2014) ;Doyle, Helen ;Belson, Stephanie ;Taber, LorraineLiteracy and numeracy are identified as necessary skills for employment. QuickSmart Online (QSO) was developed with the aim of closing the gap in numeracy skills to enable the unemployed to break the cycle of long-term unemployment. QSO focuses on the learner developing fast and accurate basic skills, which in turn develops their neural pathways, allowing the learner's working memory to be freed up to enable further learning. This paper focuses on researching facilitator stories based on feedback from learners and teachers, and on observations of QSO usage. These stories reported on the learner experience during the initial development of QSO. The program was informally trialed for a period of twelve months with learners, ranging in age from eight to the late fifties, from a variety of learning institutions. There was some evidence of engagement with the program. The five main aspects of the program that impacted on this engagement: learner confidence, learner support, learner e-literacy, online environment style, and context of learning are described. Key recommendations to increase learner engagement for the next iteration of QSO are outlined.2543 - Some of the metrics are blocked by yourconsent settings
Conference PublicationPublication Achieving sustainability in agriculture: lessons from AustraliaThe scientific evidence for environmental degradation is overwhelming however, it is sometimes difficult to translate this evidence into government and policy action and even more problematic to use it to generate behavioural change. The dynamics of scientific knowledge and the way it interacts with personal beliefs and social norms are complex and regard must always be had for the sometimes competing forces at work. Presently there are two crises enveloping the globe, one financial and the other environmental, which are forcing us to recognise the relationships between past and present human activities and future lives and landscapes. Humanity is presently facing relatively well-documented threats of climate change, land use conflict, desertification, extinctions, food, water and financial (in)security however we are still lacking some basic information about a critical part of the global system: ourselves. It is this gap which this study addressed, by inquiring into the environmental attitudes and behaviours of Australian farmers. In Australia the impacts of environmental change will be severe as it is already the driest inhabited continent on Earth and its high and unique biodiversity is especially susceptible to even minor perturbations in conditions. Impacts on food production will also be severe as approximately 60% of Australia's land surface is under agriculture and Australia exports two-thirds of what it produces.1434 2 - Some of the metrics are blocked by yourconsent settings
Publication Open AccessConference PublicationAcross-country prediction of methane emissions using rumen microbial profiles(Association for the Advancement of Animal Breeding and Genetics (AAABG), 2021) ;Hess, M K ;Donaldson, A; ;Hess, A S ;McEwan, J C; Rowe, S JRumen microbial profiles have been shown to be accurate predictors of methane emissions in a variety of species, however, it can be very costly and slow to generate a dataset with a sufficient number of individuals measured for methane who also have had rumen samples collected and processed into rumen microbial profiles for these benefits to be applied in industry. We evaluated the potential of combining datasets from New Zealand and Australian sheep to improve our ability to accurately predict methane emissions in Australian sheep. Prediction of Australian sheep methane emissions using rumen microbial profiles and phenotypes from New Zealand was possible, however, it was important to closely match the diets the sheep were fed to have confidence in the predictions. Prediction accuracies of Australian sheep methane emissions were higher when training on data collected on Australian sheep than training on New Zealand sheep; however augmentation of New Zealand data collected on a similar diet enabled more complex models to be run and an improvement in prediction accuracy.
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Conference PublicationPublication Active Contour Image Segmentation in Fisher Discriminant SpacesIn this paper, we introduce an algorithm that is able to segment objects in natural images by using active contours. Active contours are used to regularize the segmentations. Our approach utilizes multiple feature spaces to capture as much information as possible, followed by projecting the multiple dimensional features space onto a single dimension to enable improved active contour evolution. We apply the Fisher Linear Discriminant Analysis (FLDA) to optimally calculate the projection vector while providing prior knowledge on number of clusters that are present on the image. Preliminary experiments confirm that the proposed algorithm is able to segment objects in natural images while optimizing contour smoothness and noises.1098 - Some of the metrics are blocked by yourconsent settings
Conference PublicationPublication Active Contour Texture Segmentation in Modulus Wavelet Feature SpacesIn this paper we discuss a model that is able to segment textures using active contours. Our technique is based on active contour techniques using. curve evolution. We build our model on properties of human vision, in that we segment the textures in a certain feature space. We will show the advantages of using modulus feature spaces. Wavelet coefficients are shown to exhibit local features both in space and frequency domains. We will implement our model in modulus wavelet subbands.1139 355 - Some of the metrics are blocked by yourconsent settings
Publication Open AccessConference PublicationThe active role of interpreters in narrative development in two cross-cultural studies in Thailand(University of Wollongong, 2010) ;Ditton, MaryLehane, LeighThis paper details steps that were taken to ensure authentic narrative development in two cross-cultural studies of oppressed participants when interpreters were used actively in the research process. The recent interview-based studies of migrants from Burma living in Thailand highlighted some important issues of narrative methodology and analysis when interpreters were used not just as language translators but as cultural conduits. Recruitment, selection and training of the interpreters were important, and review of their translations was essential, in ensuring that the narratives were authentic. Throughout the interview-based cross-cultural studies we learned to understand the complexity of narrative methodology and analysis in exploited populations; appreciated that a 'life story' is complex and determined and shaped by socioeconomic and political forces; and identified ways of optimising the active role of interpreters in narrative development in cross-cultural research.957