Please use this identifier to cite or link to this item: https://hdl.handle.net/1959.11/15538
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dc.contributor.authorStrucken, Evaen
dc.contributor.authorGudex, Boyden
dc.contributor.authorGondro, Cedricen
dc.contributor.authorFerdosi, Mohammaden
dc.contributor.authorLee, H Ken
dc.contributor.authorSong, K Den
dc.contributor.authorGibson, Johnen
dc.contributor.authorKelly, Men
dc.contributor.authorPiper, E Ken
dc.contributor.authorPorto-Neto, L Ren
dc.contributor.authorLee, S Hen
dc.date.accessioned2014-08-26T17:09:00Z-
dc.date.issued2014-
dc.identifier.citationAnimal Genetics, 45(4), p. 572-575en
dc.identifier.issn1365-2052en
dc.identifier.issn0268-9146en
dc.identifier.urihttps://hdl.handle.net/1959.11/15538-
dc.description.abstractThe International Society for Animal Genetics (ISAG) proposed a panel of single nucleotide polymorphisms (SNPs) for parentage testing in cattle (a core panel of 100 SNPs and an additional list of 100 SNPs). However, markers specific to East Asian taurine cattle breeds were not included, and no information is available as to whether the ISAG panel performs adequately for these breeds. We tested ISAG's core (100 SNP) and full (200 SNP) panels on two East Asian taurine breeds: the Korean Hanwoo and the Japanese Wagyu, the latter from the Australian herd. Even though the power of exclusion was high at 0.99 for both ISAG panels, the core panel performed poorly with 3.01% false-positive assignments in the Hanwoo population and 3.57% in the Wagyu. The full ISAG panel identified all sire-offspring relations correctly in both populations with 0.02% of relations wrongly excluded in the Hanwoo population. Based on these results, we created and tested two population-specific marker panels: one for the Wagyu population, which showed no false-positive assignments with either 100 or 200 SNPs, and a second panel for the Hanwoo, which still had some false-positive assignments with 100 SNPs but no false positives using 200 SNPs. In conclusion, for parentage assignment in East Asian cattle breeds, only the full ISAG panel is adequate for parentage testing. If fewer markers should be used, it is advisable to use population-specific markers rather than the ISAG panel.en
dc.languageenen
dc.publisherWiley-Blackwell Publishing Ltden
dc.relation.ispartofAnimal Geneticsen
dc.titlePerformance of different SNP panels for parentage testing in two East Asian cattle breedsen
dc.typeJournal Articleen
dc.identifier.doi10.1111/age.12154en
dc.subject.keywordsAnimal Growth and Developmenten
local.contributor.firstnameEvaen
local.contributor.firstnameBoyden
local.contributor.firstnameCedricen
local.contributor.firstnameMohammaden
local.contributor.firstnameH Ken
local.contributor.firstnameK Den
local.contributor.firstnameJohnen
local.contributor.firstnameMen
local.contributor.firstnameE Ken
local.contributor.firstnameL Ren
local.contributor.firstnameS Hen
local.subject.for2008070202 Animal Growth and Developmenten
local.subject.seo2008970106 Expanding Knowledge in the Biological Sciencesen
local.profile.schoolSchool of Environmental and Rural Scienceen
local.profile.schoolSchool of Environmental and Rural Scienceen
local.profile.schoolSchool of Environmental and Rural Scienceen
local.profile.schoolAnimal Genetics and Breeding Uniten
local.profile.schoolSchool of Environmental and Rural Scienceen
local.profile.emailestrucke@une.edu.auen
local.profile.emailbgudex2@une.edu.auen
local.profile.emailcgondro2@une.edu.auen
local.profile.emailmferdos3@une.edu.auen
local.profile.emailjgibson5@une.edu.auen
local.output.categoryC1en
local.record.placeauen
local.record.institutionUniversity of New Englanden
local.identifier.epublicationsrecordune-20140618-160714en
local.publisher.placeUnited Kingdomen
local.format.startpage572en
local.format.endpage575en
local.identifier.scopusid84904171703en
local.peerreviewedYesen
local.identifier.volume45en
local.identifier.issue4en
local.contributor.lastnameStruckenen
local.contributor.lastnameGudexen
local.contributor.lastnameGondroen
local.contributor.lastnameFerdosien
local.contributor.lastnameLeeen
local.contributor.lastnameSongen
local.contributor.lastnameGibsonen
local.contributor.lastnameKellyen
local.contributor.lastnamePiperen
local.contributor.lastnamePorto-Netoen
local.contributor.lastnameLeeen
dc.identifier.staffune-id:estruckeen
dc.identifier.staffune-id:bgudex2en
dc.identifier.staffune-id:cgondro2en
dc.identifier.staffune-id:mferdos3en
dc.identifier.staffune-id:jgibson5en
local.profile.orcid0000-0002-2715-0733en
local.profile.orcid0000-0003-0666-656Xen
local.profile.orcid0000-0001-5385-4913en
local.profile.roleauthoren
local.profile.roleauthoren
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local.profile.roleauthoren
local.profile.roleauthoren
local.profile.roleauthoren
local.profile.roleauthoren
local.profile.roleauthoren
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local.identifier.unepublicationidune:15771en
local.identifier.handlehttps://hdl.handle.net/1959.11/15538en
dc.identifier.academiclevelAcademicen
dc.identifier.academiclevelAcademicen
dc.identifier.academiclevelAcademicen
dc.identifier.academiclevelAcademicen
dc.identifier.academiclevelAcademicen
local.title.maintitlePerformance of different SNP panels for parentage testing in two East Asian cattle breedsen
local.output.categorydescriptionC1 Refereed Article in a Scholarly Journalen
local.search.authorStrucken, Evaen
local.search.authorGudex, Boyden
local.search.authorGondro, Cedricen
local.search.authorFerdosi, Mohammaden
local.search.authorLee, H Ken
local.search.authorSong, K Den
local.search.authorGibson, Johnen
local.search.authorKelly, Men
local.search.authorPiper, E Ken
local.search.authorPorto-Neto, L Ren
local.search.authorLee, S Hen
local.uneassociationUnknownen
local.identifier.wosid000339419600014en
local.year.published2014en
local.subject.for2020300301 Animal growth and developmenten
local.subject.seo2020280102 Expanding knowledge in the biological sciencesen
Appears in Collections:Animal Genetics and Breeding Unit (AGBU)
Journal Article
School of Environmental and Rural Science
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