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Please use this identifier to cite or link to this item: https://hdl.handle.net/1959.11/4106
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dc.contributor.authorZenger, K Ren
dc.contributor.authorKhatkar, M Sen
dc.contributor.authorTier, Bruceen
dc.contributor.authorHobbs, Men
dc.contributor.authorCavanagh, J A Len
dc.contributor.authorSolkner, Jen
dc.contributor.authorHawken, R Jen
dc.contributor.authorBarris, Wen
dc.contributor.authorRaadsma, H Wen
local.source.editorEditor(s): AAABG: Association for the Advancement of Animal Breeding and Geneticsen
dc.date.accessioned2010-01-12T16:03:00Z-
dc.date.issued2007-
dc.identifier.citationProceedings of the Association for the Advancement of Animal Breeding and Genetics, v.17, p. 123-126en
dc.identifier.isbn1921208139en
dc.identifier.issn1328-3227en
dc.identifier.urihttps://hdl.handle.net/1959.11/4106-
dc.description.abstractThe use of a high throughput SNP genotyping platform with 15,380 bovine SNP assays, across 1546 dairy bulls resulted in a data set of approximately 23.8 M SNP data points. Stringent control measures based around low polymorphic content, sample failure, deviation from HWE, low call rate, non-Mendelian inheritance, tri-allelic SNP, and incompatible clustering of data, resulted in removal of 4321 SNPs. The majority (2973) were due to low polymorphic content (MAF<0.01), with the remaining features consistent with assay quality. Despite the need for removal of some SNP, repeatability of SNP call rate was extremely high (>99%) across repeat samples, and between platforms. SNP technology has now matured where comprehensive genome-wide analyses can be conducted in cattle with a high degree of robustness.en
dc.languageenen
dc.publisherAssociation for the Advancement of Animal Breeding and Genetics (AAABG)en
dc.relation.ispartofProceedings of the Association for the Advancement of Animal Breeding and Geneticsen
dc.titleQC analyses of SNP array data: Experiences from a large population of dairy sires with 23.8 million data pointsen
dc.typeConference Publicationen
dc.relation.conferenceAAABG 2007: 17th Conference of the Association for the Advancement of Animal Breeding and Geneticsen
dc.subject.keywordsQuantitative Genetics (incl Disease and Trait Mapping Genetics)en
local.contributor.firstnameK Ren
local.contributor.firstnameM Sen
local.contributor.firstnameBruceen
local.contributor.firstnameMen
local.contributor.firstnameJ A Len
local.contributor.firstnameJen
local.contributor.firstnameR Jen
local.contributor.firstnameWen
local.contributor.firstnameH Wen
local.subject.for2008060412 Quantitative Genetics (incl Disease and Trait Mapping Genetics)en
local.subject.seo2008830302 Dairy Cattleen
local.profile.schoolAnimal Genetics and Breeding Uniten
local.profile.emailbtier@une.edu.auen
local.output.categoryE1en
local.record.placeauen
local.record.institutionUniversity of New Englanden
local.identifier.epublicationsrecordpes:5295en
local.date.conference23rd - 26th September, 2007en
local.conference.placeArmidale, Australiaen
local.publisher.placeArmidale, Australiaen
local.format.startpage123en
local.format.endpage126en
local.peerreviewedYesen
local.identifier.volume17en
local.title.subtitleExperiences from a large population of dairy sires with 23.8 million data pointsen
local.contributor.lastnameZengeren
local.contributor.lastnameKhatkaren
local.contributor.lastnameTieren
local.contributor.lastnameHobbsen
local.contributor.lastnameCavanaghen
local.contributor.lastnameSolkneren
local.contributor.lastnameHawkenen
local.contributor.lastnameBarrisen
local.contributor.lastnameRaadsmaen
dc.identifier.staffune-id:btieren
local.profile.roleauthoren
local.profile.roleauthoren
local.profile.roleauthoren
local.profile.roleauthoren
local.profile.roleauthoren
local.profile.roleauthoren
local.profile.roleauthoren
local.profile.roleauthoren
local.profile.roleauthoren
local.identifier.unepublicationidune:4205en
dc.identifier.academiclevelAcademicen
local.title.maintitleQC analyses of SNP array dataen
local.output.categorydescriptionE1 Refereed Scholarly Conference Publicationen
local.relation.urlhttp://trove.nla.gov.au/work/35062558?selectedversion=NBD42373479en
local.relation.urlhttp://www.aaabg.org/livestocklibrary/2007/zenger123.pdfen
local.conference.detailsAAABG 2007: 17th Conference of the Association for the Advancement of Animal Breeding and Genetics, Armidale, Australia, 23rd - 26th September, 2007en
local.search.authorZenger, K Ren
local.search.authorKhatkar, M Sen
local.search.authorTier, Bruceen
local.search.authorHobbs, Men
local.search.authorCavanagh, J A Len
local.search.authorSolkner, Jen
local.search.authorHawken, R Jen
local.search.authorBarris, Wen
local.search.authorRaadsma, H Wen
local.uneassociationUnknownen
local.conference.venueUniversity of New Englanden
local.year.published2007en
local.date.start2007-09-23-
local.date.end2007-09-26-
Appears in Collections:Animal Genetics and Breeding Unit (AGBU)
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