Please use this identifier to cite or link to this item: https://hdl.handle.net/1959.11/15546
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dc.contributor.authorFerdosi, Mohammaden
dc.contributor.authorKinghorn, Brianen
dc.contributor.authorGondro, Cedricen
dc.contributor.authorVan Der Werf, Julius Hen
dc.date.accessioned2014-08-29T10:16:00Z
dc.date.issued2014en
dc.identifier.citationGenetics Selection Evolution, v.46, p. 1-14en
dc.identifier.issn0999-193Xen
dc.identifier.issn1297-9686en
dc.identifier.urihttps://hdl.handle.net/1959.11/15546en
dc.description.abstractBackground: Identifying recombination events and the chromosomal segments that constitute a gamete is useful for a number of applications in genomic analyses. In livestock, genotypic data are commonly available for half-sib families. We propose a straightforward but computationally efficient method to use single nucleotide polymorphism marker genotypes on half-sibs to reconstruct the recombination and segregation events that occurred during meiosis in a sire to form the haplotypes observed in its offspring. These meiosis events determine a block structure in paternal haplotypes of the progeny and this can be used to phase the genotypes of individuals in single half-sib families, to impute haplotypes of the sire if they are not genotyped or to impute the paternal strand of the offspring's sequence based on sequence data of the sire.en
dc.languageenen
dc.publisherBioMed Central Ltden
dc.relation.ispartofGenetics Selection Evolutionen
dc.titleDetection of recombination events, haplotype reconstruction and imputation of sires using half-sib SNP genotypesen
dc.typeJournal Articleen
dc.identifier.doi10.1186/1297-9686-46-11en
dcterms.accessRightsGolden
dc.subject.keywordsAnimal Growth and Developmenten
local.contributor.firstnameMohammaden
local.contributor.firstnameBrianen
local.contributor.firstnameCedricen
local.contributor.firstnameJulius Hen
local.subject.for2008070202 Animal Growth and Developmenten
local.subject.seo2008970106 Expanding Knowledge in the Biological Sciencesen
local.profile.schoolAnimal Genetics and Breeding Uniten
local.profile.schoolAdministrationen
local.profile.schoolSchool of Environmental and Rural Scienceen
local.profile.schoolSchool of Environmental and Rural Scienceen
local.profile.emailmferdos3@une.edu.auen
local.profile.emailbkinghor@une.edu.auen
local.profile.emailcgondro2@une.edu.auen
local.profile.emailjvanderw@une.edu.auen
local.output.categoryC1en
local.record.placeauen
local.record.institutionUniversity of New Englanden
local.identifier.epublicationsrecordune-20140618-16236en
local.publisher.placeLondon, United Kingdomen
local.identifier.runningnumber11en
local.format.startpage1en
local.format.endpage14en
local.peerreviewedYesen
local.identifier.volume46en
local.access.fulltextYesen
local.contributor.lastnameFerdosien
local.contributor.lastnameKinghornen
local.contributor.lastnameGondroen
local.contributor.lastnameVan Der Werfen
dc.identifier.staffune-id:mferdos3en
dc.identifier.staffune-id:bkinghoren
dc.identifier.staffune-id:cgondro2en
dc.identifier.staffune-id:jvanderwen
local.profile.orcid0000-0001-5385-4913en
local.profile.orcid0000-0003-0666-656Xen
local.profile.orcid0000-0003-2512-1696en
local.profile.roleauthoren
local.profile.roleauthoren
local.profile.roleauthoren
local.profile.roleauthoren
local.identifier.unepublicationidune:15779en
local.identifier.handlehttps://hdl.handle.net/1959.11/15546en
dc.identifier.academiclevelAcademicen
dc.identifier.academiclevelAcademicen
dc.identifier.academiclevelAcademicen
dc.identifier.academiclevelAcademicen
local.title.maintitleDetection of recombination events, haplotype reconstruction and imputation of sires using half-sib SNP genotypesen
local.output.categorydescriptionC1 Refereed Article in a Scholarly Journalen
local.description.statisticsepubsVisitors: 493<br />Views: 497<br />Downloads: 0en
local.search.authorFerdosi, Mohammaden
local.search.authorKinghorn, Brianen
local.search.authorGondro, Cedricen
local.search.authorVan Der Werf, Julius Hen
Appears in Collections:Animal Genetics and Breeding Unit (AGBU)
Journal Article
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