Sampling Based Approximation of Confidence Intervals for Functions of Genetic Covariance Matrices

Abstract

Approximate lower bound sampling errors of maximum likelihood estimates of covariance components and their linear functions can be obtained from the inverse of the information matrix. For non-linear functions, sampling variances are commonly determined as the variance of their first order Taylor series expansions. This is used to obtain sampling errors for estimates of heritabilities and correlations, and these quantities can be computed with most software performing such analyses. In other instances, however, more complicated functions are of interest or the linear approximation is difficult or inadequate. A pragmatic alternative then is to evaluate sampling characteristics by repeated sampling of parameters from their asymptotic, multivariate normal distribution, calculating the function(s) of interest for each sample and inspecting the distribution across replicates. This paper demonstrates the use of this approach and examines the quality of approximation obtained.