Please use this identifier to cite or link to this item: https://hdl.handle.net/1959.11/14140
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dc.contributor.authorFerdosi, Mohammaden
dc.contributor.authorKinghorn, Brianen
dc.contributor.authorVan Der Werf, Julius Hen
dc.contributor.authorGondro, Cedricen
local.source.editorEditor(s): Nicolas Lopez Villalobosen
dc.date.accessioned2014-03-06T11:43:00Z
dc.date.issued2013en
dc.identifier.citationProceedings of the Twentieth Conference of the Association for the Advancement of Animal Breeding and Genetics, p. 546-549en
dc.identifier.isbn9780473260569en
dc.identifier.urihttps://hdl.handle.net/1959.11/14140en
dc.description.abstractHSPhase is a fast and accurate algorithm for detection of recombination events, sire imputation and haplotype inference of half-sib families. It can be used on data for half-sib families with as few as 4 individuals in a family. The robustness of this algorithm in relation to genotype and pedigree errors was evaluated. If there were more than 20 half-sibs in a family, the performance of the algorithm with 5% pedigree or genotyping errors was still reliable with the accuracy of phasing and imputation above 0.87. These error rates are above those commonly observed in industry data which indicates the algorithm is sufficiently robust for deployment in real world settings. An R package implementing the method is freely available and includes a function to generate diagnostic plots which are very useful to rapidly identify problems in the dataset.en
dc.languageenen
dc.publisherAAABG: Association for the Advancement of Animal Breeding and Geneticsen
dc.relation.ispartofProceedings of the Twentieth Conference of the Association for the Advancement of Animal Breeding and Geneticsen
dc.relation.ispartofseriesProceedings of the AAABG ... Conferenceen
dc.titleEffect of genotype and pedigree error on detection of recombination events, sire imputation and haplotype inference using the HSPhase algorithmen
dc.typeConference Publicationen
dc.relation.conference20th Conference of the Association for the Advancement of Animal Breeding and Genetics: Translating Science into Action, Napier, New Zealand, 20th - 23rd October, 2013en
dc.subject.keywordsQuantitative Genetics (incl Disease and Trait Mapping Genetics)en
local.contributor.firstnameMohammaden
local.contributor.firstnameBrianen
local.contributor.firstnameJulius Hen
local.contributor.firstnameCedricen
local.subject.for2008060412 Quantitative Genetics (incl Disease and Trait Mapping Genetics)en
local.subject.seo2008970106 Expanding Knowledge in the Biological Sciencesen
local.profile.schoolAdministrationen
local.profile.schoolSchool of Environmental and Rural Scienceen
local.profile.schoolSchool of Environmental and Rural Scienceen
local.profile.emailmferdos2@une.edu.auen
local.profile.emailbkinghor@une.edu.auen
local.profile.emailjvanderw@une.edu.auen
local.profile.emailcgondro2@une.edu.auen
local.output.categoryE1en
local.record.placeauen
local.record.institutionUniversity of New Englanden
local.identifier.epublicationsrecordune-20140115-123858en
local.publisher.placePalmerston North, New Zealanden
local.format.startpage546en
local.format.endpage549en
local.series.issn1328-3227en
local.series.number20en
local.peerreviewedYesen
local.contributor.lastnameFerdosien
local.contributor.lastnameKinghornen
local.contributor.lastnameVan Der Werfen
local.contributor.lastnameGondroen
dc.identifier.staffune-id:mferdos2en
dc.identifier.staffune-id:bkinghoren
dc.identifier.staffune-id:jvanderwen
dc.identifier.staffune-id:cgondro2en
local.profile.orcid0000-0003-2512-1696en
local.profile.orcid0000-0003-0666-656Xen
local.profile.roleauthoren
local.profile.roleauthoren
local.profile.roleauthoren
local.profile.roleauthoren
local.identifier.unepublicationidune:14353en
dc.identifier.academiclevelAcademicen
dc.identifier.academiclevelAcademicen
dc.identifier.academiclevelAcademicen
dc.identifier.academiclevelAcademicen
local.title.maintitleEffect of genotype and pedigree error on detection of recombination events, sire imputation and haplotype inference using the HSPhase algorithmen
local.output.categorydescriptionE1 Refereed Scholarly Conference Publicationen
local.relation.urlhttp://www.aaabg.org/aaabghome/proceedings20.phpen
local.conference.details20th Conference of the Association for the Advancement of Animal Breeding and Genetics: Translating Science into Action, Napier, New Zealand, 20th - 23rd October, 2013en
local.description.statisticsepubsVisitors: 326<br />Views: 327<br />Downloads: 1en
local.search.authorFerdosi, Mohammaden
local.search.authorKinghorn, Brianen
local.search.authorVan Der Werf, Julius Hen
local.search.authorGondro, Cedricen
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School of Environmental and Rural Science
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