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https://hdl.handle.net/1959.11/14140
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DC Field | Value | Language |
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dc.contributor.author | Ferdosi, Mohammad H | en |
dc.contributor.author | Kinghorn, Brian P | en |
dc.contributor.author | Van Der Werf, Julius H | en |
dc.contributor.author | Gondro, Cedric | en |
local.source.editor | Editor(s): Nicolas Lopez Villalobos | en |
dc.date.accessioned | 2014-03-06T11:43:00Z | - |
dc.date.available | 2021-07-15T03:02:55Z | - |
dc.date.issued | 2013 | - |
dc.identifier.citation | Proceedings of the Association for the Advancement of Animal Breeding and Genetics, v.20, p. 546-549 | en |
dc.identifier.isbn | 9780473260569 | en |
dc.identifier.issn | 1328-3227 | en |
dc.identifier.uri | https://hdl.handle.net/1959.11/14140 | - |
dc.description.abstract | HSPhase is a fast and accurate algorithm for detection of recombination events, sire imputation and haplotype inference of half-sib families. It can be used on data for half-sib families with as few as 4 individuals in a family. The robustness of this algorithm in relation to genotype and pedigree errors was evaluated. If there were more than 20 half-sibs in a family, the performance of the algorithm with 5% pedigree or genotyping errors was still reliable with the accuracy of phasing and imputation above 0.87. These error rates are above those commonly observed in industry data which indicates the algorithm is sufficiently robust for deployment in real world settings. An R package implementing the method is freely available and includes a function to generate diagnostic plots which are very useful to rapidly identify problems in the dataset. | en |
dc.language | en | en |
dc.publisher | Association for the Advancement of Animal Breeding and Genetics (AAABG) | en |
dc.relation.ispartof | Proceedings of the Association for the Advancement of Animal Breeding and Genetics | en |
dc.title | Effect of genotype and pedigree error on detection of recombination events, sire imputation and haplotype inference using the HSPhase algorithm | en |
dc.type | Conference Publication | en |
dc.relation.conference | AAABG 2013: 20th Conference of the Association for the Advancement of Animal Breeding and Genetics: Translating Science into Action | en |
dcterms.accessRights | Bronze | en |
dc.subject.keywords | Quantitative Genetics (incl Disease and Trait Mapping Genetics) | - |
local.contributor.firstname | Mohammad | - |
local.contributor.firstname | Brian | - |
local.contributor.firstname | Julius H | - |
local.contributor.firstname | Cedric | - |
local.subject.for2008 | 060412 Quantitative Genetics (incl Disease and Trait Mapping Genetics) | en |
local.subject.seo2008 | 970106 Expanding Knowledge in the Biological Sciences | en |
local.profile.school | School of Environmental and Rural Science | en |
local.profile.school | School of Environmental and Rural Science | en |
local.profile.school | School of Environmental and Rural Science | en |
local.profile.email | mferdos2@une.edu.au | en |
local.profile.email | bkinghor@une.edu.au | en |
local.profile.email | jvanderw@une.edu.au | en |
local.profile.email | cgondro2@une.edu.au | en |
local.output.category | E1 | en |
local.record.place | au | - |
local.record.institution | University of New England | - |
local.identifier.epublicationsrecord | une-20140115-123858 | - |
local.date.conference | 20th - 23rd October, 2013 | en |
local.conference.place | Napier, New Zealand | en |
local.publisher.place | Armidale, Australia | en |
local.format.startpage | 546 | en |
local.format.endpage | 549 | en |
local.url.open | http://www.aaabg.org/aaabghome/AAABG20papers/ferdosi20546.pdf | en |
local.peerreviewed | Yes | en |
local.identifier.volume | 20 | en |
local.access.fulltext | Yes | en |
local.contributor.lastname | Ferdosi | - |
local.contributor.lastname | Kinghorn | - |
local.contributor.lastname | Van Der Werf | - |
local.contributor.lastname | Gondro | - |
dc.identifier.staff | une-id:mferdos2 | en |
dc.identifier.staff | une-id:bkinghor | en |
dc.identifier.staff | une-id:jvanderw | en |
dc.identifier.staff | une-id:cgondro2 | en |
local.profile.orcid | 0000-0003-2512-1696 | en |
local.profile.orcid | 0000-0003-0666-656X | en |
local.profile.role | author | en |
local.profile.role | author | en |
local.profile.role | author | en |
local.profile.role | author | en |
local.identifier.unepublicationid | une:14353 | - |
dc.identifier.academiclevel | Academic | en |
dc.identifier.academiclevel | Academic | en |
dc.identifier.academiclevel | Academic | en |
dc.identifier.academiclevel | Academic | en |
local.title.maintitle | Effect of genotype and pedigree error on detection of recombination events, sire imputation and haplotype inference using the HSPhase algorithm | - |
local.relation.fundingsourcenote | Next-Generation BioGreen 21 Program (No. PJ008196), Rural Development Administration, Republic of Korea | en |
local.output.categorydescription | E1 Refereed Scholarly Conference Publication | - |
local.relation.url | http://www.aaabg.org/aaabghome/proceedings20.php | en |
local.conference.details | AAABG 2013: 20th Conference of the Association for the Advancement of Animal Breeding and Genetics: Translating Science into Action, Napier, New Zealand, 20th - 23rd October, 2013 | en |
local.search.author | Ferdosi, Mohammad | - |
local.search.author | Kinghorn, Brian | - |
local.search.author | Van Der Werf, Julius H | - |
local.search.author | Gondro, Cedric | - |
local.uneassociation | Unknown | en |
dc.date.presented | 2013-10 | - |
local.atsiresearch | No | en |
local.sensitive.cultural | No | en |
local.year.published | 2013 | - |
local.year.presented | 2013 | - |
local.fileurl.closedpublished | https://rune.une.edu.au/web/retrieve/b295230c-604a-4a68-a590-fb92f2522ec1 | - |
local.subject.for2020 | 310506 Gene mapping | en |
local.subject.seo2020 | 280102 Expanding knowledge in the biological sciences | en |
local.date.start | 2013-10-20 | - |
local.date.end | 2013-10-23 | - |
local.profile.affiliationtype | Unknown | en |
local.profile.affiliationtype | Unknown | en |
local.profile.affiliationtype | Unknown | en |
local.profile.affiliationtype | Unknown | en |
Appears in Collections: | Conference Publication School of Environmental and Rural Science |
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