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https://hdl.handle.net/1959.11/13931
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DC Field | Value | Language |
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dc.contributor.author | Detterer, Dion | en |
dc.contributor.author | Lee, Seung Hwan | en |
dc.contributor.author | Kwan, Paul H | en |
dc.contributor.author | Gondro, Cedric | en |
local.source.editor | Editor(s): Nicolas Lopez Villalobos | en |
dc.date.accessioned | 2014-02-06T11:04:00Z | - |
dc.date.issued | 2013 | - |
dc.identifier.citation | Proceedings of the Association for the Advancement of Animal Breeding and Genetics, v.20, p. 511-514 | en |
dc.identifier.isbn | 9780473260569 | en |
dc.identifier.issn | 1328-3227 | en |
dc.identifier.uri | https://hdl.handle.net/1959.11/13931 | - |
dc.description.abstract | Korean 'Hanwoo' cattle are prized for their high marbling ability and meat quality. Classically, these cattle possess a homogeneous yellow coat colouring, with farmers believing that 'Hanwoo' with white spotted coats are crossbred and therefore unacceptable for breeding purposes. In this study we first attempted to determine if the coat spots were due to a non-'Hanwoo' genetic background or, alternatively, if the trait is intrinsic to the breed. By genotyping 232 (136 spotted) animals from half-sib families on the Illumina Bovine 50K SNP array, we compared the genotyped Hanwoo to other unrelated 'Hanwoo' and European taurine breeds using principal component analysis. Results showed no evidence of crossbreeding in the spotted animals. A differential evolution algorithm was then used to evolve a classifier for the trait which selected 12 SNP with an accuracy of ~82% in separating individuals; further investigation using only haplotypes inherited from the sires resulted in a marked improvement to ~92% accuracy for these 12 SNP. This research highlights the potential for using these SNP as genetic markers to either entirely remove the trait from the population in the long term or manage matings so that the trait is not expressed in the offspring. | en |
dc.language | en | en |
dc.publisher | Association for the Advancement of Animal Breeding and Genetics (AAABG) | en |
dc.relation.ispartof | Proceedings of the Association for the Advancement of Animal Breeding and Genetics | en |
dc.title | A Binary Classifier Using SNP Data for Prediction of Phenotypic Outcomes in Hanwoo (Korean) Cattle | en |
dc.type | Conference Publication | en |
dc.relation.conference | AAABG 2013: 20th Conference of the Association for the Advancement of Animal Breeding and Genetics: Translating Science into Action | en |
dc.subject.keywords | Animal Breeding | en |
dc.subject.keywords | Gene Expression (incl Microarray and other genome-wide approaches) | en |
dc.subject.keywords | Neural, Evolutionary and Fuzzy Computation | en |
local.contributor.firstname | Dion | en |
local.contributor.firstname | Seung Hwan | en |
local.contributor.firstname | Paul H | en |
local.contributor.firstname | Cedric | en |
local.subject.for2008 | 080108 Neural, Evolutionary and Fuzzy Computation | en |
local.subject.for2008 | 070201 Animal Breeding | en |
local.subject.for2008 | 060405 Gene Expression (incl Microarray and other genome-wide approaches) | en |
local.subject.seo2008 | 830301 Beef Cattle | en |
local.subject.seo2008 | 890201 Application Software Packages (excl. Computer Games) | en |
local.subject.seo2008 | 970107 Expanding Knowledge in the Agricultural and Veterinary Sciences | en |
local.profile.school | School of Science and Technology | en |
local.profile.school | School of Environmental and Rural Science | en |
local.profile.email | dion.detterer@gmail.com | en |
local.profile.email | wkwan2@une.edu.au | en |
local.profile.email | cgondro2@une.edu.au | en |
local.output.category | E1 | en |
local.record.place | au | en |
local.record.institution | University of New England | en |
local.identifier.epublicationsrecord | une-20131112-163450 | en |
local.date.conference | 20th - 23rd October, 2013 | en |
local.conference.place | Napier, New Zealand | en |
local.publisher.place | Armidale, Australia | en |
local.format.startpage | 511 | en |
local.format.endpage | 514 | en |
local.peerreviewed | Yes | en |
local.identifier.volume | 20 | en |
local.contributor.lastname | Detterer | en |
local.contributor.lastname | Lee | en |
local.contributor.lastname | Kwan | en |
local.contributor.lastname | Gondro | en |
dc.identifier.staff | une-id:ddetter2 | en |
dc.identifier.staff | une-id:slee52 | en |
dc.identifier.staff | une-id:wkwan2 | en |
dc.identifier.staff | une-id:cgondro2 | en |
local.profile.orcid | 0000-0003-0666-656X | en |
local.profile.role | author | en |
local.profile.role | author | en |
local.profile.role | author | en |
local.profile.role | author | en |
local.identifier.unepublicationid | une:14144 | en |
dc.identifier.academiclevel | Academic | en |
dc.identifier.academiclevel | Academic | en |
dc.identifier.academiclevel | Academic | en |
dc.identifier.academiclevel | Academic | en |
local.title.maintitle | A Binary Classifier Using SNP Data for Prediction of Phenotypic Outcomes in Hanwoo (Korean) Cattle | en |
local.output.categorydescription | E1 Refereed Scholarly Conference Publication | en |
local.relation.url | http://www.aaabg.org/aaabghome/proceedings20.php | en |
local.relation.grantdescription | ARC/DP130100542 | en |
local.conference.details | AAABG 2013: 20th Conference of the Association for the Advancement of Animal Breeding and Genetics: Translating Science into Action, Napier, New Zealand, 20th - 23rd October, 2013 | en |
local.search.author | Detterer, Dion | en |
local.search.author | Lee, Seung Hwan | en |
local.search.author | Kwan, Paul H | en |
local.search.author | Gondro, Cedric | en |
local.uneassociation | Unknown | en |
local.year.published | 2013 | en |
local.subject.for2020 | 460203 Evolutionary computation | en |
local.subject.for2020 | 300109 Non-genetically modified uses of biotechnology | en |
local.subject.for2020 | 310505 Gene expression (incl. microarray and other genome-wide approaches) | en |
local.subject.seo2020 | 100401 Beef cattle | en |
local.subject.seo2020 | 220401 Application software packages | en |
local.subject.seo2020 | 280101 Expanding knowledge in the agricultural, food and veterinary sciences | en |
local.date.start | 2013-10-20 | - |
local.date.end | 2013-10-23 | - |
Appears in Collections: | Conference Publication |
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