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    Conference Publication
    A linkage disequilibrium method to reposition single nucleotide polymorphism and improve genotype imputation accuracy
    (Association for the Advancement of Animal Breeding and Genetics, 2025-06) ; ; ;

    Incorrect positioning of single nucleotide polymorphisms (SNP) can affect imputation accuracy and decrease the accuracy of genomic prediction. This study aimed to develop a method to identify the most likely genomic position of the misplaced SNPs which have low imputation accuracy by fitting a Spline curve using linkage disequilibrium (LD) information. The accuracy of the method was validated by correctly identifying the masked position of 2,560 out of 45,918 SNP with a 100% correlation between the original and estimated positions. Candidate SNPs with low imputation accuracy (< 0.5) were assumed to be incorrectly positioned on the genome assembly. The pair-wise LD between these SNPs and other SNPs on the genome was used to fit a Spline curve. The Spline peak was considered the most likely position for the candidate SNPs. This LD-based method assigned the new position for 92% of the SNPs with low imputation accuracy and improved the mean imputation accuracy of these repositioned SNPs from 0.21 to 0.97 in Australian Brahman cattle.

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    Validation of genomic prediction for methane emissions in Australian Merino sheep
    (Association for the Advancement of Animal Breeding and Genetics, 2025-06) ;
    Mortimer, S I
    ;
    ; ;
    Clayton, E H
    ;
    Donaldson, A
    ;
    Paganoni, B
    ;
    Thompson, A
    ;
    ;

    Methane emissions are being recorded in Merino sheep across Australia at a large scale. These records will form a reference population that will be used to estimate genomically predicted breeding values for methane for the sheep industry. This paper aims to determine the predictive ability of the current data to estimate methane rate (ml/min) EBVs using single step GBLUP. Phenotypic data was collected in research and commercial seedstock flocks using portable accumulation chambers. Accuracy of prediction was tested through cross validation, using individual flock data as independent test sets. Accuracy ranged from 0.02 and 0.42 for individual animal EBVs. The large range is likely due to variation in linkage with the reference population, environmental conditions prior to measurement, and some inconsistency of measuring protocol. Further work is needed to improve recording strategies and the size and diversity of the reference population.

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    Feed-intake and methane efficiency for weight and growth pre-slaughter of MLA resource flock lambs
    (Association for the Advancement of Animal Breeding and Genetics, 2025-06)
    Paganoni, B
    ;
    Bolt, B
    ;
    Bowden, A
    ;
    ; ;

    Improving feed-use efficiency and reducing methane emissions in sheep are critical strategies for enhancing market access, profitability, and the long-term sustainability of the sheep industry. In this study, 758 lambs from Merino, Maternal and Shedding ewes mated artificially to Merino, Maternal, Terminal and Shedding sires were assessed for weight, growth, and methane production prior to slaughter across six kill groups (2 years x 3 ages). Weight and growth accounted for 72-89% of the observed variation in daily feed intake. No additional variation was explained by body composition or methane production, as measured in this study. Residual feed intake exhibited high variability across all breed types (sire means ranged from -0.17 to +0.18 kg/hd/day, SD=0.12), suggesting that genetic selection for feed efficiency and methane reduction is achievable for Terminal, Shedding, and Merino sheep. This research highlights the potential for genetic improvements in reducing methane emissions and enhancing feed efficiency in sheep, offering pathways to a more sustainable and profitable sheep industry.

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    Journal Article
    Loneliness in Older Adults Receiving Hemodialysis and Associated Factors: A Cross-Sectional Study
    (Lippincott Williams & Wilkins)
    CHUANG, Yeu-Hui
    ;
    LU, Shu-Ching
    ;
    WANG, Chih-Yu
    ;
    HUANG, Hui-Chuan
    ;
    HU, Sophia H
    ;

    Background: The number of patients with end-stage renal disease (ESRD) in Taiwan continues to rise steadily, and hemodialysis is the primary treatment for these patients. More than 50% of patients on hemodialysis are over 65 years of age, indicative of an aging patient population. Changes in lifestyle, dietary habits, and social roles after commencing hemodialysis easily cause patients to feel uncertain, depressed, and/or lonely. However, a limited number of studies have examined the issue of loneliness among older adults on hemodialysis.

    Purpose: This study was designed to better understand loneliness and its associated factors among older patients receiving hemodialysis.

    Methods: A cross-sectional research design with convenience sampling was employed with a total of 146 patients. Eligible participants aged 65 years or older and receiving hemodialysis for more than 3 months were recruited from two hospitals in northern Taiwan. Structured questionnaires, including a demographic characteristics questionnaire, the Hemodialysis Patient Fatigue Scale, Social Support Scale, and UCLA Loneliness Scale version 3, were used to collect data.

    Results: The mean loneliness score was 41.5 out of a maximum of 80. A significant positive relationship was found between fatigue and loneliness, and a significant negative relationship was found between social support and loneliness. Gender, fatigue, and social support were identified as predictors of loneliness.

    Conclusions/Implications for Practice: The results indicate that older patients receiving hemodialysis have a moderate level of loneliness. Based on the identified predictors, nurses should pay particular attention to patients who are female, are experiencing a higher fatigue level, and/or have lower social support. Future studies may use these results to develop strategies for preventing and improving loneliness among older adults receiving hemodialysis.

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    Journal Article
    Causation and epidemiological features of proliferative lip and facial lesions in Lao goats
    (Springer Dordrecht, 2025-11-27)
    L. Olmo

    Past surveys and studies have identified a syndrome of lip and facial dermatitis as common in Lao goats and identified Orf virus (ORFV) as the likely cause. To more definitively determine the cause of this syndrome, a matched case-control study was implemented in 70 smallholder goat farms and a large-scale goat holding from Savannakhet province, Laos. Forty-one scab samples from goats with lip and facial dermatitis (cases) and 41 paired samples from unaffected animals (controls) were collected from 31 goat holdings over 12months. Samples were tested using quantitative PCR assays targeting possible pathogens causing such lesions. The prevalence of PCR-positive samples in case and control goats was 100% and 95.1%, respectively, for ORFV (P=0.15) and 19.5% and 29.3% (P=0.3) for Dermatophilus congolensis. Pseudocowpox virus and bovine popular stomatitis virus were not detected in any samples. There was a clear difference between the log10 genome copies (GC) per µL DNA extract of ORFV in positive samples from cases (7.00±0.17) and controls (2.62±0.18, P<0.0001). This was not true for D. congolensis with similar GC detected in the case and control goats. More than 4 log higher GC in affected cases identifies ORFV as the likely cause of the syndrome in Lao goats with little role for D. congolensis. Phylogenetic analysis showed no genetic variation of ORFV in the study samples and close similarity to sequences from China. The findings suggest that Orf disease has a sporadic distribution, mostly occurring in goats during the first 6-months of life.

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    Conference Publication
    Orgasmic Gushing: where does the fluid come from and how is it produced?
    (Women in Research (WiR), 2005)
    O'Brien, GM
    There are three sexual fluids from women: lubrication (e.g. transudation of fluid across the mucosa of the vagina, and mucus from the greater vestibular glands); female ejaculation (from paraurethral glands); and gushing. Orthodox western medicine and physiology does not yet have a standardized description or explanation for the third, gushing. The present paper proposes that the gushing fluid is a filtrate of plasma, produced by the mechanism known as transudation. This is an additional application for the transudation mechanism, after the well accepted roles in lubrication of the vagina, and in generating serous fluids. The present model proposes that the fluid released in a gush arises from the ventral wall of the vagina due to the presence there of increased surface area of mucosa, dilated arterioles, pressurized venous and lymphatic plexuses, and compression provided by muscle contraction during orgasm.
      64899
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    Dataset
    Mapping Long Term Changes in Mangrove Cover and Predictions of Future Change under Different Climate Change Scenarios in the Sundarbans, Bangladesh
    (2018-05-22)
    Ghosh, Manoj Kumer
    ;
    Ground-based readings of temperature and rainfall, satellite imagery, aerial photographs, ground verification data and Digital Elevation Model (DEM) were used in this study. Ground-based meteorological information was obtained from Bangladesh Meteorological Department (BMD) for the period 1977 to 2015 and was used to determine the trends of rainfall and temperature in this thesis. Satellite images obtained from the US Geological Survey (USGS) Center for Earth Resources Observation and Science (EROS) website (www.glovis.usgs.gov) in four time periods were analysed to assess the dynamics of mangrove population at species level. Remote sensing techniques, as a solution to lack of spatial data at a relevant scale and difficulty in accessing the mangroves for field survey and also as an alternative to the traditional methods were used in monitoring of the changes in mangrove species composition, . To identify mangrove forests, a number of satellite sensors have been used, including Landsat TM/ETM/OLI, SPOT, CBERS, SIR, ASTER, and IKONOS and Quick Bird. The use of conventional medium-resolution remote sensor data (e.g., Landsat TM, ASTER, SPOT) in the identification of different mangrove species remains a challenging task. In many developing countries, the high cost of acquiring high- resolution satellite imagery excludes its routine use. The free availability of archived images enables the development of useful techniques in its use and therefor Landsat imagery were used in this study for mangrove species classification. Satellite imagery used in this study includes: Landsat Multispectral Scanner (MSS) of 57 m resolution acquired on 1st February 1977, Landsat Thematic Mapper (TM) of 28.5 m resolution acquired on 5th February 1989, Landsat Enhanced Thematic Mapper (ETM+) of 28.5 m resolution acquired on 28th February 2000 and Landsat Operational Land Imager (OLI) of 30 m resolution acquired on 4th February 2015. To study tidal channel dynamics of the study area, aerial photographs from 1974 and 2011, and a satellite image from 2017 were used. Satellite images from 1974 with good spatial resolution of the area were not available, and therefore aerial photographs of comparatively high and fine resolution were considered adequate to obtain information on tidal channel dynamics. Although high-resolution satellite imagery was available for 2011, aerial photographs were used for this study due to their effectiveness in terms of cost and also ease of comparison with the 1974 photographs. The aerial photographs were sourced from the Survey of Bangladesh (SOB). The Sentinel-2 satellite image from 2017 was downloaded from the European Space Agency (ESA) website (https://scihub.copernicus.eu/). In this research, elevation data acts as the main parameter in the determination of the sea level rise (SLR) impacts on the spatial distribution of the future mangrove species of the Bangladesh Sundarbans. High resolution elevation data is essential for this kind of research where every centimeter counts due to the low-lying characteristics of the study area. The high resolution (less than 1m vertical error) DEM data used in this study was obtained from Water Resources Planning Organization (WRPO), Bangladesh. The elevation information used to construct the DEM was originally collected by a Finnish consulting firm known as FINNMAP in 1991 for the Bangladesh government.
      48162  50
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    Reinforced Behavioral Variability and Sequence Learning Across Species
    (Association for Behavior Analysis International (ABAI), 2012)
    Doolan, Kathleen
    ;
    ;
    McEwan, James
    Previous research shows that reinforcement of variable responding will facilitate sequence learning in rats (Neuringer, Deiss & Olson, 2000) but may interfere with sequence learning in humans (Maes & van der Goot, 2006). The present study aimed to replicate and extend previous research by assessing the role of behavioral variability in the learning of difficult target sequences across 3 species: humans (n = 60), hens (n = 18) and possums (n = 6). Participants were randomly allocated to one of three experimental conditions (Control, Variable, Any). In the Control conditions sequences were only reinforced if they were the target sequence, in the Variability conditions sequences were concurrently reinforced on a Variable Interval 60-s schedule if the just entered sequence met a variability criterion, and in the Any condition sequences were concurrently reinforced on a Variable Interval 60-s schedule for any sequence entered. The results support previous findings with animals and humans; hens and possums were more likely to learn the target sequence in the Variability condition, and human participants were more likely to learn the target sequence in the Control condition. Possible explanations for differences between the performance of humans and animals on this task will be discussed.
      39888  1
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    Open Access
    Dataset
    The drivers and consequences of change to the physical character of waterholes on an Australian dryland river
    This dataset provides all the raw and analysed data for the thesis titled 'The drivers and consequences of change to the physical character of waterholes on an Australian dryland river'.
    The data has been divided into four folders that are aligned with the data chapters for the thesis. These being: (Ch 2) waterhole mapping, (Ch 3) floodplain gullies, (Ch 4) sediment transport and (Ch 5) fish.
    A README file is provided for each chapter which contains a description of the individual datasets and a list of files that make up each dataset.
    The data in this archive is a combination of data obtained from desktop studies as well as field work on the Darling River (i.e., the fish data).
    Further, fish data were collected on the Darling River between Bourke and Wilcannia. Waterhole mapping was undertaken on the Barwon-Darling between Walgett and Wilcannia. Gully mapping was undertaken on the Barwon-Darling River between Mungindi and Wilcannia. Sediment transport capacity was assessed at five sites between Collarenebri and Tilpa.
      37685  2804
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    Journal Article
    A Review into Effective Classroom Management and Strategies for Student Engagement: Teacher and Student Roles in Today’s Classrooms
    (Redfame Publishing Inc, 2019-12)
    Franklin, Hayley
    ;
    A teacher's role encompasses far more than just imparting curricula outcomes to their students: they need to equip students with the necessary tools to experience social and academic success both inside the classroom and beyond it. Teachers need to empower students with the means to critically analyse the world around them in order to develop into critical independent thinkers. Students need to be proficient in utilising skills associated with higher levels of thinking, that will empower them with the ability to identify, analyse and evaluate the infinite volume of information available through our rapidly changing digital world. Just as teachers need to take responsibility for the various methods of teaching and instruction in the classroom, it is essential for students to take ownership of the learning process, to ensure future success in university environments, where sustained personal effort and metacognitive skills are fundamental to academic success. The object of the review of the literature surrounding the roles of teacher and student, effective classroom management strategies, and successful evidence-based teaching and learning pedagogies, is to assist new and experienced teachers in the promotion of a positive classroom experience for all.
      29708  47390