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    Publication
    Open Access
    Journal Article
    Identification of Novel Cathepsin B Inhibitors with Implications in Alzheimer’s Disease: Computational Refining and Biochemical Evaluation
    (MDPI AG, 2021-08) ;
    Kumar, Ashutosh
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    Sheriff, Samran
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    Gupta, Veer
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    Godinez, Angela
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    Saks, Danit
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    Sarkar, Soumalya
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    Shen, Ting
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    Mirzaei, Mehdi
    ;
    Basavarajappa, Devaraj
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    Abyadeh, Morteza
    ;
    Singh, Sachin K
    ;
    Dua, Kamal
    ;
    Zhang. Kam Y J
    ;
    Graham, Stuart L
    ;
    Gupta, Vivek

    Amyloid precursor protein (APP), upon proteolytic degradation, forms aggregates of amyloid β (Aβ) and plaques in the brain, which are pathological hallmarks of Alzheimer’s disease (AD). Cathepsin B is a cysteine protease enzyme that catalyzes the proteolytic degradation of APP in the brain. Thus, cathepsin B inhibition is a crucial therapeutic aspect for the discovery of new anti-Alzheimer’s drugs. In this study, we have employed mixed-feature ligand-based virtual screening (LBVS) by integrating pharmacophore mapping, docking, and molecular dynamics to detect small, potent molecules that act as cathepsin B inhibitors. The LBVS model was generated by using hydrophobic (HY), hydrogen bond acceptor (HBA), and hydrogen bond donor (HBD) features, using a dataset of 24 known cathepsin B inhibitors of both natural and synthetic origins. A validated eight-feature pharmacophore hypothesis (Hypo III) was utilized to screen the Maybridge chemical database. The docking score, MM-PBSA, and MM-GBSA methodology was applied to prioritize the lead compounds as virtual screening hits. These compounds share a common amide scaffold, and showed important interactions with Gln23, Cys29, His110, His111, Glu122, His199, and Trp221. The identified inhibitors were further evaluated for cathepsin-B-inhibitory activity. Our study suggests that pyridine, acetamide, and benzohydrazide compounds could be used as a starting point for the development of novel therapeutics.

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    Journal Article
    Dialogic Pedagogies: Defining and Analyzing Four Types of Dialogue in Education
    (Viterbo University, 2021-12-21)

    The empirical research on dialogue-based pedagogies shows that they improve student outcomes and, thus, teachers should make more use of these methods (Edwards-Groves & Hoare, 2012). However deeper analyses about whether certain modes of dialogue are better than others is under-researched, resulting in little information about which models best help teachers develop effective dialogic learning practices (Howe & Abedin, 2013, p. 325). Some researchers have argued that there is a gap in the literature, as there has been little proper exploration of what constitutes effective classroom dialogue, with practical examples of how to structure discourse for learning lacking in classroom practice (Myhill et al., 2005; Mercer, 2010; Edwards-Groves & Hoare, 2012; Howe & Abedin, 2013). Edwards-Groves and Davidson (2020, p. 126) suggest that "developing a shared language and collective understandings about classroom talk and interaction among teachers, and with and among their students, largely remains taken-for-granted in practice." Howe and Abedin (2013) suggest that this leads to a lack of understanding about models of effective dialogue and allows poorer forms of dialogic pedagogy to persist. Alexander (2004) shares this concern that the most effective kinds of talk in classrooms are not widely practised. Nystrand (1997) also discusses how different modes of classroom discussion engender particular epistemic roles for both teachers and students, which can constrain their thinking and contribute to disadvantage. In sum, "the quality of student learning is closely related to the quality of classroom talk" (p. 29). Therefore, it is vitally important that we are able to demonstrate what kind of talk is most effective in the classroom. This paper identifies different kinds of dialogue-based pedagogies and, through conceptual analysis, articulates the notions of dialogue they assume and the educational implications of these different notions of dialogue. Four types of dialogic pedagogy have been identified in the existing literature. Although they may go by different names to different people, for consistency, this paper will categorise them as Teacher-Directed Dialogue, Mere Conversation, Adversarial Dialogue, and Exploratory Dialogue, each of which will be described in its own subsection.

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    Publication
    Book Chapter
    Philosophy for/with Children and Teachers' Perspectives: The Need to Understand Teachers' Beliefs and Values
    (Routledge, 2022-11-15)

    This chapter argues that there is a gap in current research in Philosophy for/with Children (P4wC) that focusses on teachers' perspectives, and particularly in relation to their beliefs and values. This chapter will look briefly the current status of P4wC in the sphere of education broadly. It will then move on to exploring how teachers' perspectives, through analyses of their beliefs and values, adds significant value in education. This chapter then explores the importance of teachers' beliefs and values specifically in the context of P4wC, identifying the contribution that an analysis of teacher beliefs and values can make. It then concludes by analysing some recent P4wC research which has begun to explore teachers' perspectives, before finishing with future research directions that build on these previous studies which will lay important groundwork for extending the reach of P4wC into education systems.

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    Open Access
    Conference Publication
    Dystocia mortality incidence in lambs from Australia and New Zealand
    (Australian Veterinary Association Ltd (AVA), 2025-10-16)
    Bruce, Mieghan
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    Haslin, Emmanuelle
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    Clarke, Bronwyn
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    Thompson, Andrew
    ;
    Kenyon, Paul
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    Ridler, Anne
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    Morris, Steve
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    Flay, Kate
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    Smith, Jen
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    Refshauge, Gordon
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    Behrendt, Ralph
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    Robertson, Susan M
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    King, Belinda
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    Friend, Michael
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    Broster, John
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    Brien, Forbes
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    Barwell, Rob
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    Jacobson, Caroline

    Introduction: Dystocia is an important contributor to lamb mortality. Most studies that include lamb necropsies report cause of death using proportional mortality (expressed as a proportion of necropsies) rather than mortality incidence (expressed as proportion of lambs born). Understanding dystocia mortality incidence will inform research priorities to address the impact of dystocia.

    Research objective: To collate and analyse existing data to determine the incidence of dystocia mortality in lambs and inform future research and extension priorities for improving lamb survival.

    Method: Meta-analyses of lamb necropsy data from studies conducted in Australia and New Zealand since 2000. We analysed more than 46,000 lambing records involving 8228 lamb deaths and 6225 lamb necropsies using random effects models with a restricted maximum likelihood estimator to estimate pooled proportional dystocia mortality ratios and weighted summary dystocia mortality incidence (pooled and separately for each birth type).

    Results: Dystocia mortality incidence (weighted summary proportion of lamb births) was 10% (95% confidence interval (CI): 8, 12) with very high heterogeneity between farms/studies (I2=98.3%). Dystocia mortality incidence was higher for triplet-born/higher-order-multiples (15%; 95% CI 11, 19) than twin-born (7%; 95% CI 5, 8) and single-born lambs (7%; 95% CI 5, 8). Dystocia proportional mortality (weighted summary proportion of necropsies) was 45% (95% CI 40, 49) with high heterogeneity (I2=92.8%) which was consistent with previous reviews. Multiple-born lambs are at similar or increased risk of dying from dystocia compared to single-born lambs.

    Conclusion: Strategies to reduce dystocia impact and improve lamb survival should address risk factors for dystocia in all birth types.

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    Open Access
    Journal Article
    Competition in philosophy is a feminist issue
    (University of Birmingham, 2022-10-19)

    The role of competition in philosophy is not just a pedagogical concern, but also a feminist concern. Competitive philosophy in schools is intrinsically linked to Janice Moulton's feminist critique of academic philosophy referred to as 'The Adversary Method'. She argues that dialogue that emphasises adversarial methods of argumentation promote dominant notions of masculinity. Many philosophers and educators argue that this traditional ideal of masculinity and the adversarial mode of communicating are problematic for a variety of reasons. There has also been a broad array of empirical research demonstrating gender differences in classroom dialogue, including girls feeling targeted by teachers and boys due to the culture established with competitive-type dialogues. There is a direct link between this research and the espousal of masculine Reason in education. More, this kind of Reason is one that is overemphasised in competitive dialogues, such as debates or competitive philosophy. There are three primary concerns for competitive philosophy. Firstly, that it disadvantages girls in particular by over-emphasising masculine attributes. Secondly, that it disadvantages all students, regardless of sex, by over-emphasising masculine attributes. And thirdly, that it undermines the values of the Philosophy for/with Children and the Community of Inquiry approach by, again, over-emphasising masculine attributes. Therefore, the concern for competition in philosophy is not just about pedagogy, it is about justice.

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    Conference Publication
    Orgasmic Gushing: where does the fluid come from and how is it produced?
    (Women in Research (WiR), 2005)
    O'Brien, GM
    There are three sexual fluids from women: lubrication (e.g. transudation of fluid across the mucosa of the vagina, and mucus from the greater vestibular glands); female ejaculation (from paraurethral glands); and gushing. Orthodox western medicine and physiology does not yet have a standardized description or explanation for the third, gushing. The present paper proposes that the gushing fluid is a filtrate of plasma, produced by the mechanism known as transudation. This is an additional application for the transudation mechanism, after the well accepted roles in lubrication of the vagina, and in generating serous fluids. The present model proposes that the fluid released in a gush arises from the ventral wall of the vagina due to the presence there of increased surface area of mucosa, dilated arterioles, pressurized venous and lymphatic plexuses, and compression provided by muscle contraction during orgasm.
      65017
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    Publication
    Dataset
    Mapping Long Term Changes in Mangrove Cover and Predictions of Future Change under Different Climate Change Scenarios in the Sundarbans, Bangladesh
    (2018-05-22)
    Ghosh, Manoj Kumer
    ;
    Ground-based readings of temperature and rainfall, satellite imagery, aerial photographs, ground verification data and Digital Elevation Model (DEM) were used in this study. Ground-based meteorological information was obtained from Bangladesh Meteorological Department (BMD) for the period 1977 to 2015 and was used to determine the trends of rainfall and temperature in this thesis. Satellite images obtained from the US Geological Survey (USGS) Center for Earth Resources Observation and Science (EROS) website (www.glovis.usgs.gov) in four time periods were analysed to assess the dynamics of mangrove population at species level. Remote sensing techniques, as a solution to lack of spatial data at a relevant scale and difficulty in accessing the mangroves for field survey and also as an alternative to the traditional methods were used in monitoring of the changes in mangrove species composition, . To identify mangrove forests, a number of satellite sensors have been used, including Landsat TM/ETM/OLI, SPOT, CBERS, SIR, ASTER, and IKONOS and Quick Bird. The use of conventional medium-resolution remote sensor data (e.g., Landsat TM, ASTER, SPOT) in the identification of different mangrove species remains a challenging task. In many developing countries, the high cost of acquiring high- resolution satellite imagery excludes its routine use. The free availability of archived images enables the development of useful techniques in its use and therefor Landsat imagery were used in this study for mangrove species classification. Satellite imagery used in this study includes: Landsat Multispectral Scanner (MSS) of 57 m resolution acquired on 1st February 1977, Landsat Thematic Mapper (TM) of 28.5 m resolution acquired on 5th February 1989, Landsat Enhanced Thematic Mapper (ETM+) of 28.5 m resolution acquired on 28th February 2000 and Landsat Operational Land Imager (OLI) of 30 m resolution acquired on 4th February 2015. To study tidal channel dynamics of the study area, aerial photographs from 1974 and 2011, and a satellite image from 2017 were used. Satellite images from 1974 with good spatial resolution of the area were not available, and therefore aerial photographs of comparatively high and fine resolution were considered adequate to obtain information on tidal channel dynamics. Although high-resolution satellite imagery was available for 2011, aerial photographs were used for this study due to their effectiveness in terms of cost and also ease of comparison with the 1974 photographs. The aerial photographs were sourced from the Survey of Bangladesh (SOB). The Sentinel-2 satellite image from 2017 was downloaded from the European Space Agency (ESA) website (https://scihub.copernicus.eu/). In this research, elevation data acts as the main parameter in the determination of the sea level rise (SLR) impacts on the spatial distribution of the future mangrove species of the Bangladesh Sundarbans. High resolution elevation data is essential for this kind of research where every centimeter counts due to the low-lying characteristics of the study area. The high resolution (less than 1m vertical error) DEM data used in this study was obtained from Water Resources Planning Organization (WRPO), Bangladesh. The elevation information used to construct the DEM was originally collected by a Finnish consulting firm known as FINNMAP in 1991 for the Bangladesh government.
      48195  50
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    Conference Publication
    Reinforced Behavioral Variability and Sequence Learning Across Species
    (Association for Behavior Analysis International (ABAI), 2012)
    Doolan, Kathleen
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    McEwan, James
    Previous research shows that reinforcement of variable responding will facilitate sequence learning in rats (Neuringer, Deiss & Olson, 2000) but may interfere with sequence learning in humans (Maes & van der Goot, 2006). The present study aimed to replicate and extend previous research by assessing the role of behavioral variability in the learning of difficult target sequences across 3 species: humans (n = 60), hens (n = 18) and possums (n = 6). Participants were randomly allocated to one of three experimental conditions (Control, Variable, Any). In the Control conditions sequences were only reinforced if they were the target sequence, in the Variability conditions sequences were concurrently reinforced on a Variable Interval 60-s schedule if the just entered sequence met a variability criterion, and in the Any condition sequences were concurrently reinforced on a Variable Interval 60-s schedule for any sequence entered. The results support previous findings with animals and humans; hens and possums were more likely to learn the target sequence in the Variability condition, and human participants were more likely to learn the target sequence in the Control condition. Possible explanations for differences between the performance of humans and animals on this task will be discussed.
      39891  1
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    Open Access
    Dataset
    The drivers and consequences of change to the physical character of waterholes on an Australian dryland river
    This dataset provides all the raw and analysed data for the thesis titled 'The drivers and consequences of change to the physical character of waterholes on an Australian dryland river'.
    The data has been divided into four folders that are aligned with the data chapters for the thesis. These being: (Ch 2) waterhole mapping, (Ch 3) floodplain gullies, (Ch 4) sediment transport and (Ch 5) fish.
    A README file is provided for each chapter which contains a description of the individual datasets and a list of files that make up each dataset.
    The data in this archive is a combination of data obtained from desktop studies as well as field work on the Darling River (i.e., the fish data).
    Further, fish data were collected on the Darling River between Bourke and Wilcannia. Waterhole mapping was undertaken on the Barwon-Darling between Walgett and Wilcannia. Gully mapping was undertaken on the Barwon-Darling River between Mungindi and Wilcannia. Sediment transport capacity was assessed at five sites between Collarenebri and Tilpa.
      37772  2892
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    Open Access
    Journal Article
    A Review into Effective Classroom Management and Strategies for Student Engagement: Teacher and Student Roles in Today’s Classrooms
    (Redfame Publishing Inc, 2019-12)
    Franklin, Hayley
    ;
    A teacher's role encompasses far more than just imparting curricula outcomes to their students: they need to equip students with the necessary tools to experience social and academic success both inside the classroom and beyond it. Teachers need to empower students with the means to critically analyse the world around them in order to develop into critical independent thinkers. Students need to be proficient in utilising skills associated with higher levels of thinking, that will empower them with the ability to identify, analyse and evaluate the infinite volume of information available through our rapidly changing digital world. Just as teachers need to take responsibility for the various methods of teaching and instruction in the classroom, it is essential for students to take ownership of the learning process, to ensure future success in university environments, where sustained personal effort and metacognitive skills are fundamental to academic success. The object of the review of the literature surrounding the roles of teacher and student, effective classroom management strategies, and successful evidence-based teaching and learning pedagogies, is to assist new and experienced teachers in the promotion of a positive classroom experience for all.
      29888  47825