Please use this identifier to cite or link to this item:
https://hdl.handle.net/1959.11/55577
Title: | Sequencing technologies to study the pollination services of Apis mellifera in apple orchards - Dataset | Contributor(s): | Lobaton Garces, Juan David (creator); Rader, Romina (supervisor) ; Duitama, Jorge (project team member); Chia, Ming (project team member); Stanley, David (project team member) ; Milla, Liz (project team member); Lins, Luana (project team member); Macfadyen, Sarina (project team member); Andrew, Rose (project team member) ; Encinas-Viso, Francisco (project team member) | Publication Date: | 2022-12-17 | Open Access: | Yes | DOI: | 10.25952/zdhh-4352 | Handle Link: | https://hdl.handle.net/1959.11/55577 | Related Research Outputs: | https://hdl.handle.net/1959.11/55576 https://www.ncbi.nlm.nih.gov/bioproject/PRJNA657757/ www.ncbi.nlm.nih.gov |
Abstract/Context: | To understand the mechanisms underlying pollinator-dependent plant reproduction in cultivated landscapes, we need an in-depth knowledge of fine-scale interactions between insects and flowering plants. The advent of high-resolution molecular techniques, such as DNA/RNA sequencing, have facilitated the plight of pollination ecologists to track pollen movement between flowers by insects. This thesis aims to progress this knowledge by investigating cultivar pollen carried by honeybees in apple orchards to (i) investigate the use of transcriptome analyses as a novel molecular metric to evaluate pollinator effectiveness; (ii) examine the gene expression response to honeybee flower visits; (iii) generate molecular markers for different apple cultivars, and (iv) examine the microbiome communities related to pollination by metagenomics approaches. | Publication Type: | Dataset | Fields of Research (FoR) 2020: | 300208 Farm management, rural management and agribusiness | Socio-Economic Objective (SEO) 2020: | 180699 Terrestrial systems and management not elsewhere classified | Location: | Yarra Valley, Victoria Stanthorpe, Queensland Canberra, ACT Armidale, New South Wales |
HERDC Category Description: | X Dataset | Description: | To replicate the experiments, all reads generated by Illumina sequencing have been deposited in the Sequence Read Archive (SRA) database (http://www.ncbi.nlm.nih.gov/sra) under BioProject PRJNA751423 and PRJNA657757. | Project: | Sequencing technologies to study the pollination services of Apis mellifera in apple orchards | Dataset Managed By: | Romina Rader / Juan David Lobaton Garces | Dataset Stored at: | University of New England | Primary Contact Details: | Juan David Lobaton Garces - jdlgarces@gmail.com | Dataset Custodian Details: | Romina Rader - rrader@une.edu.au |
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Appears in Collections: | Dataset School of Environmental and Rural Science |
Files in This Item:
File | Description | Size | Format | |
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opendataset/Abstract Thesis Ph.D Juan Lobaton Garces.pdf | 9.67 kB | Adobe PDF Download Adobe | View/Open | |
opendataset/administrative/GarcesJuan_2023-01-25_file_report.txt | Archive file report | 430 B | Text | View/Open |
opendataset/administrative/GarcesJuan_2023-01-25_file_extension_report.txt | Archive file extensions | 46 B | Text | View/Open |
opendataset/administrative/GarcesJuan_2023-01-25_file_list_report.csv | Archive file list | 67.91 kB | Unknown | View/Open |
opendataset/administrative/GarcesJuan_2023-01-25_duplicate_file_report.csv | Archive duplicate files | 7.91 kB | Unknown | View/Open |
opendataset/administrative/GarcesJuan_2023-01-25_filesToParse_file_checks_2023-01-25.csv | Archive file checks | 54.49 kB | Unknown | View/Open |
opendataset/administrative/GarcesJuan_2023-01-25_progress_4_bags_2023-01-25.txt | Archive log | 1.06 kB | Text | View/Open |
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