Optimization of Dairy Cattle Breeding Programs with Genotype by Environment Interaction in Kenya

Title
Optimization of Dairy Cattle Breeding Programs with Genotype by Environment Interaction in Kenya
Publication Date
2022-08-21
Author(s)
Wahinya, Peter K
( author )
OrcID: https://orcid.org/0000-0003-4268-6744
Email: pwahiny2@une.edu.au
UNE Id une-id:pwahiny2
Jeyaruban, Gilbert M
( author )
OrcID: https://orcid.org/0000-0002-0231-0120
Email: gjeyarub@une.edu.au
UNE Id une-id:gjeyarub
Swan, Andrew A
( author )
OrcID: https://orcid.org/0000-0001-8048-3169
Email: aswan@une.edu.au
UNE Id une-id:aswan
van der Werf, Julius H J
( author )
OrcID: https://orcid.org/0000-0003-2512-1696
Email: jvanderw@une.edu.au
UNE Id une-id:jvanderw
Type of document
Journal Article
Language
en
Entity Type
Publication
Publisher
MDPI AG
Place of publication
Basel, Switzerland
DOI
10.3390/agriculture12081274
UNE publication id
une:1959.11/54891
Abstract

Genotype by environment interaction influences the effectiveness of dairy cattle breeding programs in developing countries. This study aimed to investigate the optimization of dairy cattle breeding programs for three different environments within Kenya. Multi-trait selection index theory was applied using deterministic simulation in SelAction software to determine the optimum strategy that would maximize genetic response for dairy cattle under low, medium, and high production systems. Four different breeding strategies were simulated: a single production system breeding program with progeny testing bulls in the high production system environment (HIGH); one joint breeding program with progeny testing bulls in three environments (JOINT); three environment-specific breeding programs each with testing of bulls within each environment (IND); and three environment-specific breeding programs each with testing of bulls within each environment using both phenotypic and genomic information (IND-GS). Breeding strategies were evaluated for the whole industry based on the predicted genetic response weighted by the relative size of each environ-ment. The effect of increasing the size of the nucleus was also evaluated for all four strategies using 500, 1500, 2500, and 3000 cows in the nucleus. Correlated responses in the low and medium produc-tion systems when using a HIGH strategy were 18% and 3% lower, respectively, compared to direct responses achieved by progeny testing within each production system. The JOINT strategy with one joint breeding program with bull testing within the three production systems produced the highest response among the strategies using phenotypes only. The IND-GS strategy using phenotypic and ge-nomic information produced extra responses compared to a similar strategy (IND) using phenotypes only, mainly due to a lower generation interval. Going forward, the dairy industry in Kenya would benefit from a breeding strategy involving progeny testing bulls within each production system.

Link
Citation
Agriculture, 12(8), p. 1-10
ISSN
2077-0472
Start page
1
End page
10
Rights
Attribution 4.0 International

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