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|Title:||Development of the beef genomic pipeline for BREEDPLAN single step evaluation||Contributor(s):||Connors, Natalie (author) ; Cook, Jim (author); Girard, Christian (author); Tier, Bruce (author); Gore, Klint (author); Johnston, David (author); Ferdosi, Mohammad (author)||Publication Date:||2017||Open Access:||Yes||Handle Link:||https://hdl.handle.net/1959.11/23151||Open Access Link:||http://agbu.une.edu.au/AAABG%202017/72Connors22317.pdf||Abstract:||Single step genomic BLUP (SS-GBLUP) for BREEDPLAN beef cattle evaluations is currently being tested for implementation across a number of breeds. A genomic data pipeline has been developed to enable efficient analysis of the industry-recorded SNP genotypes for incorporation in SS-GBLUP analyses. Complex data collection, along with format and/or naming convention inconsistencies challenges efficient data processing. This pipeline includes quality control of variable formatted data, and imputation of genotypes, for building the genomic relationship matrix required for implementation into single step evaluation.||Publication Type:||Conference Publication||Conference Name:||22nd Conference of the Association for the Advancement of Animal Breeding and Genetics, Townsville, Australia, 2nd - 5th July, 2017||Conference Details:||22nd Conference of the Association for the Advancement of Animal Breeding and Genetics, Townsville, Australia, 2nd - 5th July, 2017||Source of Publication:||Proceedings of the Twenty-second (22nd) Conference of the Association for the Advancement of Animal Breeding and Genetics, v.22, p. 317-320||Publisher:||AAABG: Association for the Advancement of Animal Breeding and Genetics||Place of Publication:||Fitzroy, Australia||Field of Research (FOR):||070201 Animal Breeding||Peer Reviewed:||Yes||HERDC Category Description:||E1 Refereed Scholarly Conference Publication||Other Links:||http://www.aaabg.org/aaabghome/||Series Name:||Proceedings of the AAABG ... Conference||Statistics to Oct 2018:||Visitors: 33
|Appears in Collections:||Animal Genetics and Breeding Unit (AGBU)|
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