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Title: Development of the beef genomic pipeline for BREEDPLAN single step evaluation
Contributor(s): Connors, Natalie  (author)orcid ; Cook, Jim  (author)orcid ; Girard, Christian  (author)orcid ; Tier, Bruce  (author); Gore, Klint  (author); Johnston, David  (author)orcid ; Ferdosi, Mohammad  (author)orcid 
Publication Date: 2017
Open Access: Yes
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Open Access Link: Access Link
Abstract: Single step genomic BLUP (SS-GBLUP) for BREEDPLAN beef cattle evaluations is currently being tested for implementation across a number of breeds. A genomic data pipeline has been developed to enable efficient analysis of the industry-recorded SNP genotypes for incorporation in SS-GBLUP analyses. Complex data collection, along with format and/or naming convention inconsistencies challenges efficient data processing. This pipeline includes quality control of variable formatted data, and imputation of genotypes, for building the genomic relationship matrix required for implementation into single step evaluation.
Publication Type: Conference Publication
Conference Details: AAABG 2017: 22nd Conference of the Association for the Advancement of Animal Breeding and Genetics, Townsville, Australia, 2nd - 5th July, 2017
Source of Publication: Proceedings of the Association for the Advancement of Animal Breeding and Genetics, v.22, p. 317-320
Publisher: Association for the Advancement of Animal Breeding and Genetics (AAABG)
Place of Publication: Armidale, Australia
ISSN: 1328-3227
Fields of Research (FoR) 2008: 070201 Animal Breeding
Fields of Research (FoR) 2020: 300305 Animal reproduction and breeding
Socio-Economic Objective (SEO) 2008: 830301 Beef Cattle
Socio-Economic Objective (SEO) 2020: 100401 Beef cattle
Peer Reviewed: Yes
HERDC Category Description: E1 Refereed Scholarly Conference Publication
Publisher/associated links:
Appears in Collections:Animal Genetics and Breeding Unit (AGBU)
Conference Publication
School of Law
School of Science and Technology

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