Development of the beef genomic pipeline for BREEDPLAN single step evaluation

Title
Development of the beef genomic pipeline for BREEDPLAN single step evaluation
Publication Date
2017
Author(s)
Connors, Natalie
( author )
OrcID: https://orcid.org/0000-0003-4866-4757
Email: nconnor2@une.edu.au
UNE Id une-id:nconnor2
Cook, Jim
( author )
OrcID: https://orcid.org/0000-0002-7405-500X
Email: jcook8@une.edu.au
UNE Id une-id:jcook8
Girard, Christian
( author )
OrcID: https://orcid.org/0000-0003-0542-7073
Email: cgirard@une.edu.au
UNE Id une-id:cgirard
Tier, Bruce
Gore, Klint
Johnston, David
( author )
OrcID: https://orcid.org/0000-0002-4995-8311
Email: djohnsto@une.edu.au
UNE Id une-id:djohnsto
Ferdosi, Mohammad
( author )
OrcID: https://orcid.org/0000-0001-5385-4913
Email: mferdos3@une.edu.au
UNE Id une-id:mferdos3
Editor
Editor(s): Laercio Porto-Neto
Type of document
Conference Publication
Language
en
Entity Type
Publication
Publisher
Association for the Advancement of Animal Breeding and Genetics (AAABG)
Place of publication
Armidale, Australia
UNE publication id
une:23335
Abstract
Single step genomic BLUP (SS-GBLUP) for BREEDPLAN beef cattle evaluations is currently being tested for implementation across a number of breeds. A genomic data pipeline has been developed to enable efficient analysis of the industry-recorded SNP genotypes for incorporation in SS-GBLUP analyses. Complex data collection, along with format and/or naming convention inconsistencies challenges efficient data processing. This pipeline includes quality control of variable formatted data, and imputation of genotypes, for building the genomic relationship matrix required for implementation into single step evaluation.
Link
Citation
Proceedings of the Association for the Advancement of Animal Breeding and Genetics, v.22, p. 317-320
ISSN
1328-3227
Start page
317
End page
320

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