Estimating the proportion of variation in susceptibility to schizophrenia captured by common SNPs

Author(s)
Lee, Sang Hong
DeCandia, Teresa R
Visscher, Peter M
Wray, Naomi R
Ripke, Stephan
Yang, Jian
Sullivan, Patrick F
Goddard, Michael E
Keller, Matthew C
Publication Date
2012
Abstract
Schizophrenia is a complex disorder caused by both genetic and environmental factors. Using 9,087 affected individuals, 12,171 controls and 915,354 imputed SNPs from the Schizophrenia Psychiatric Genome-Wide Association Study (GWAS) Consortium (PGC-SCZ), we estimate that 23% (s.e. = 1%) of variation in liability to schizophrenia is captured by SNPs. We show that a substantial proportion of this variation must be the result of common causal variants, that the variance explained by each chromosome is linearly related to its length (r = 0.89, P = 2.6 x 10(-8)), that the genetic basis of schizophrenia is the same in males and females, and that a disproportionate proportion of variation is attributable to a set of 2,725 genes expressed in the central nervous system (CNS; P = 7.6 x 10(-8)). These results are consistent with a polygenic genetic architecture and imply more individual SNP associations will be detected for this disease as sample size increases.
Citation
Nature Genetics, 44(3), p. 247-250
ISSN
1546-1718
1061-4036
Link
Language
en
Publisher
Nature Publishing Group
Title
Estimating the proportion of variation in susceptibility to schizophrenia captured by common SNPs
Type of document
Journal Article
Entity Type
Publication

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