Please use this identifier to cite or link to this item: https://hdl.handle.net/1959.11/19867
Title: RNA Sequencing Applied to Livestock Production
Contributor(s): de las Heras-Saldana, Sara  (author)orcid ; Al-Mamun, Hawlader A (author); Ferdosi, Mohammad  (author)orcid ; Khansefid, Majid (author); Gondro, Cedric  (author)orcid 
Publication Date: 2016
DOI: 10.1007/978-3-319-43335-6_4
Handle Link: https://hdl.handle.net/1959.11/19867
Abstract: High-throughput sequencing technology is rapidly replacing expression arrays and becoming the standard method for global expression profiling studies. The development of low-cost, rapid sequencing technologies has enabled detailed quantification of gene expression levels, affecting almost every field in the life sciences. In this chapter, we will overview the key points for gene expression analysis using RNA-seq data. First, we will discuss the workflows of RNA-seq data analysis followed by a discussion about the currently available tools for data analysis and a comparison between these tools. The chapter concludes with a discussion about the application of RNA-seq data analysis in livestock. In the appendix, using an example from livestock RNA-seq data, we show a simple script for RNA-seq data analysis.
Publication Type: Book Chapter
Grant Details: ARC/DP130100542
Source of Publication: Systems Biology in Animal Production and Health, v.1, p. 63-94
Publisher: Springer
Place of Publication: Cham, Switzerland
ISBN: 9783319433332
9783319433356
Fields of Research (FoR) 2008: 060405 Gene Expression (incl. Microarray and other genome-wide approaches)
070201 Animal Breeding
Fields of Research (FoR) 2020: 300305 Animal reproduction and breeding
310505 Gene expression (incl. microarray and other genome-wide approaches)
Socio-Economic Objective (SEO) 2008: 830399 Livestock Raising not elsewhere classified
Socio-Economic Objective (SEO) 2020: 100401 Beef cattle
HERDC Category Description: B1 Chapter in a Scholarly Book
Publisher/associated links: http://trove.nla.gov.au/version/236889571
Editor: Editor(s): Haja N Kadarmideen
Appears in Collections:Animal Genetics and Breeding Unit (AGBU)
Book Chapter

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